.anaxigraph.yml
.dockerignore
.env.example
Dockerfile
LICENSE
MANIFEST.in
README.md
compose.maxos.yml
compose.yml
pyproject.toml
repo_instructions.md
repositories.example.yml
docs/advanced-operations.md
docs/agent-plugin.md
docs/architecture.md
docs/coding-patterns.md
docs/data-model.md
docs/docker.md
docs/feature-development-plan.md
docs/language-support.md
docs/maxos-agent.md
docs/onboarding.md
docs/pattern-catalog.md
docs/platform-support.md
docs/plugin-system.md
docs/releasing.md
docs/semantic-bootstrap-p0-handoff.md
docs/adr/0001-internal-layers-and-analyzer-ir.md
docs/adr/0002-goal-specific-architecture-decisions.md
docs/adr/0003-direct-canonical-scan-persistence.md
docs/adr/0004-agent-funded-semantic-execution.md
docs/adr/0005-tree-sitter-javascript-typescript.md
docs/adr/0006-reference-forms-and-ir-v2.md
docs/releases/0.4.0.md
examples/maxos-agent.anaxigraph.yml
src/anaxigraph/__init__.py
src/anaxigraph/__main__.py
src/anaxigraph/agent.py
src/anaxigraph/agent_decision.py
src/anaxigraph/agent_decision_handoff_language.py
src/anaxigraph/agent_decision_language.py
src/anaxigraph/agent_decision_payload.py
src/anaxigraph/agent_decision_safety.py
src/anaxigraph/agent_decomposition.py
src/anaxigraph/agent_decomposition_mapping.py
src/anaxigraph/agent_finding.py
src/anaxigraph/agent_graph.py
src/anaxigraph/agent_graph_read.py
src/anaxigraph/agent_impact.py
src/anaxigraph/agent_lexicon.py
src/anaxigraph/agent_payload.py
src/anaxigraph/agent_scope_evidence.py
src/anaxigraph/agent_task_path.py
src/anaxigraph/analyzer_capabilities.py
src/anaxigraph/analyzer_facts.py
src/anaxigraph/api.py
src/anaxigraph/api_agent_routes.py
src/anaxigraph/api_context.py
src/anaxigraph/api_coverage.py
src/anaxigraph/api_dashboard.py
src/anaxigraph/api_graph.py
src/anaxigraph/api_history_routes.py
src/anaxigraph/api_lifespan.py
src/anaxigraph/api_limits.py
src/anaxigraph/api_models.py
src/anaxigraph/api_operation_gate.py
src/anaxigraph/api_operations.py
src/anaxigraph/api_patterns.py
src/anaxigraph/api_repository.py
src/anaxigraph/api_routes.py
src/anaxigraph/api_scan.py
src/anaxigraph/api_semantic.py
src/anaxigraph/api_semantic_routes.py
src/anaxigraph/api_support.py
src/anaxigraph/architecture.py
src/anaxigraph/architecture_charter.py
src/anaxigraph/architecture_charter_contract.py
src/anaxigraph/architecture_charter_corrections.py
src/anaxigraph/architecture_dead_code.py
src/anaxigraph/architecture_graph.py
src/anaxigraph/architecture_guidance.py
src/anaxigraph/architecture_models.py
src/anaxigraph/architecture_persistence.py
src/anaxigraph/architecture_reassessment.py
src/anaxigraph/architecture_rules.py
src/anaxigraph/architecture_vocabulary.py
src/anaxigraph/bounded_export.py
src/anaxigraph/cli.py
src/anaxigraph/cli_agent_commands.py
src/anaxigraph/cli_common.py
src/anaxigraph/cli_index_commands.py
src/anaxigraph/cli_parser.py
src/anaxigraph/cli_pattern_commands.py
src/anaxigraph/cli_repository_commands.py
src/anaxigraph/cli_semantic_commands.py
src/anaxigraph/cli_server_commands.py
src/anaxigraph/cli_services.py
src/anaxigraph/cli_workflows.py
src/anaxigraph/clock.py
src/anaxigraph/config.py
src/anaxigraph/config_authority.py
src/anaxigraph/coverage.py
src/anaxigraph/environment_doctor.py
src/anaxigraph/finding_history.py
src/anaxigraph/finding_language.py
src/anaxigraph/finding_mcp.py
src/anaxigraph/finding_transport.py
src/anaxigraph/git.py
src/anaxigraph/graph_contract.py
src/anaxigraph/guidance.py
src/anaxigraph/history.py
src/anaxigraph/history_discovery.py
src/anaxigraph/history_frames.py
src/anaxigraph/history_jobs.py
src/anaxigraph/history_mcp.py
src/anaxigraph/index_authority.py
src/anaxigraph/ir.py
src/anaxigraph/ir_conformance.py
src/anaxigraph/ir_serialization.py
src/anaxigraph/languages.py
src/anaxigraph/local_runtime.py
src/anaxigraph/mcp_core.py
src/anaxigraph/mcp_runtime.py
src/anaxigraph/mcp_server.py
src/anaxigraph/models.py
src/anaxigraph/onboarding.py
src/anaxigraph/onboarding_cli.py
src/anaxigraph/onboarding_clients.py
src/anaxigraph/onboarding_detection.py
src/anaxigraph/onboarding_policy.py
src/anaxigraph/onboarding_templates.py
src/anaxigraph/operational_health.py
src/anaxigraph/pattern_candidate_language.py
src/anaxigraph/pattern_candidate_models.py
src/anaxigraph/pattern_candidate_query.py
src/anaxigraph/pattern_candidate_selection.py
src/anaxigraph/pattern_candidates.py
src/anaxigraph/pattern_catalog.py
src/anaxigraph/pattern_catalog_models.py
src/anaxigraph/pattern_catalog_parse.py
src/anaxigraph/pattern_evaluation_contract.py
src/anaxigraph/pattern_evidence.py
src/anaxigraph/pattern_intelligence.py
src/anaxigraph/pattern_language.py
src/anaxigraph/pattern_query.py
src/anaxigraph/pattern_signals.py
src/anaxigraph/pattern_targets.py
src/anaxigraph/reassessment_advice.py
src/anaxigraph/reassessment_evidence.py
src/anaxigraph/reassessment_lineage.py
src/anaxigraph/reassessment_semantic_advice.py
src/anaxigraph/registry.py
src/anaxigraph/relationship_builder.py
src/anaxigraph/relationships.py
src/anaxigraph/repository_watch.py
src/anaxigraph/scan_commit.py
src/anaxigraph/scan_persistence.py
src/anaxigraph/scan_preparation.py
src/anaxigraph/scan_snapshot.py
src/anaxigraph/scanner.py
src/anaxigraph/semantic.py
src/anaxigraph/semantic_agent.py
src/anaxigraph/semantic_agent_contracts.py
src/anaxigraph/semantic_agent_paging.py
src/anaxigraph/semantic_agent_protocol.py
src/anaxigraph/semantic_background.py
src/anaxigraph/semantic_background_progress.py
src/anaxigraph/semantic_config_port.py
src/anaxigraph/semantic_contract.py
src/anaxigraph/semantic_execution.py
src/anaxigraph/semantic_file_language.py
src/anaxigraph/semantic_fresh_eyes_contract.py
src/anaxigraph/semantic_fresh_eyes_evidence.py
src/anaxigraph/semantic_fresh_eyes_plan.py
src/anaxigraph/semantic_fresh_eyes_requests.py
src/anaxigraph/semantic_fresh_eyes_review.py
src/anaxigraph/semantic_freshness.py
src/anaxigraph/semantic_graph.py
src/anaxigraph/semantic_group_membership.py
src/anaxigraph/semantic_index_port.py
src/anaxigraph/semantic_job_state.py
src/anaxigraph/semantic_lease_claim.py
src/anaxigraph/semantic_leases.py
src/anaxigraph/semantic_mcp.py
src/anaxigraph/semantic_module_context.py
src/anaxigraph/semantic_module_intrinsic.py
src/anaxigraph/semantic_parallel.py
src/anaxigraph/semantic_pattern_identity.py
src/anaxigraph/semantic_pattern_plan.py
src/anaxigraph/semantic_pattern_requests.py
src/anaxigraph/semantic_pattern_results.py
src/anaxigraph/semantic_pattern_state.py
src/anaxigraph/semantic_ports.py
src/anaxigraph/semantic_records.py
src/anaxigraph/semantic_remote_recovery.py
src/anaxigraph/semantic_remote_worker.py
src/anaxigraph/semantic_reporting.py
src/anaxigraph/semantic_request_analysis.py
src/anaxigraph/semantic_request_support.py
src/anaxigraph/semantic_requests.py
src/anaxigraph/semantic_results.py
src/anaxigraph/semantic_runner.py
src/anaxigraph/semantic_scope_plan.py
src/anaxigraph/semantic_service.py
src/anaxigraph/semantic_services.py
src/anaxigraph/semantic_status.py
src/anaxigraph/semantic_status_language.py
src/anaxigraph/semantic_status_queries.py
src/anaxigraph/semantic_taxonomy_clusters.py
src/anaxigraph/semantic_taxonomy_contract.py
src/anaxigraph/semantic_taxonomy_expansion.py
src/anaxigraph/semantic_taxonomy_identity.py
src/anaxigraph/semantic_taxonomy_language.py
src/anaxigraph/semantic_taxonomy_partition.py
src/anaxigraph/semantic_taxonomy_plan.py
src/anaxigraph/semantic_taxonomy_requests.py
src/anaxigraph/semantic_taxonomy_results.py
src/anaxigraph/semantic_taxonomy_runner.py
src/anaxigraph/semantic_taxonomy_validation.py
src/anaxigraph/storage.py
src/anaxigraph/trend_service.py
src/anaxigraph/understanding.py
src/anaxigraph/up_cli.py
src/anaxigraph.egg-info/PKG-INFO
src/anaxigraph.egg-info/SOURCES.txt
src/anaxigraph.egg-info/dependency_links.txt
src/anaxigraph.egg-info/entry_points.txt
src/anaxigraph.egg-info/requires.txt
src/anaxigraph.egg-info/top_level.txt
src/anaxigraph/analyzers/__init__.py
src/anaxigraph/analyzers/base.py
src/anaxigraph/analyzers/javascript.py
src/anaxigraph/analyzers/javascript_dependencies.py
src/anaxigraph/analyzers/javascript_evidence.py
src/anaxigraph/analyzers/javascript_parser.py
src/anaxigraph/analyzers/javascript_semantics.py
src/anaxigraph/analyzers/javascript_symbols.py
src/anaxigraph/analyzers/javascript_workspace.py
src/anaxigraph/analyzers/json_support.py
src/anaxigraph/analyzers/python.py
src/anaxigraph/analyzers/python_evidence.py
src/anaxigraph/analyzers/python_module_semantics.py
src/anaxigraph/analyzers/python_syntax.py
src/anaxigraph/analyzers/text.py
src/anaxigraph/catalog/architecture-vocabulary-v3.json
src/anaxigraph/catalog/patterns-composition-workflow.json
src/anaxigraph/catalog/patterns-data-state.json
src/anaxigraph/catalog/patterns-function-construction.json
src/anaxigraph/catalog/patterns-integration-concurrency.json
src/anaxigraph/catalog/patterns-module-boundary.json
src/anaxigraph/catalog/patterns-object-interface.json
src/anaxigraph/catalog/patterns-reliability-testing.json
src/anaxigraph/catalog/patterns-subsystem-architecture.json
src/anaxigraph/dashboard/__init__.py
src/anaxigraph/dashboard/app.js
src/anaxigraph/dashboard/dashboard-core.js
src/anaxigraph/dashboard/dashboard-format.js
src/anaxigraph/dashboard/favicon.svg
src/anaxigraph/dashboard/finding-controller.js
src/anaxigraph/dashboard/findings-view.js
src/anaxigraph/dashboard/fresh-eyes-view.js
src/anaxigraph/dashboard/fresh-eyes.css
src/anaxigraph/dashboard/graph-events.js
src/anaxigraph/dashboard/graph-model.js
src/anaxigraph/dashboard/graph-regions.css
src/anaxigraph/dashboard/graph-regions.js
src/anaxigraph/dashboard/graph-view.js
src/anaxigraph/dashboard/history-controller.js
src/anaxigraph/dashboard/history-view.js
src/anaxigraph/dashboard/index.html
src/anaxigraph/dashboard/journey-navigation.css
src/anaxigraph/dashboard/mask-icon.svg
src/anaxigraph/dashboard/module-events.js
src/anaxigraph/dashboard/module-view.js
src/anaxigraph/dashboard/navigation.js
src/anaxigraph/dashboard/overview-view.js
src/anaxigraph/dashboard/patterns-render.js
src/anaxigraph/dashboard/patterns-view.js
src/anaxigraph/dashboard/patterns.css
src/anaxigraph/dashboard/reassessment-view.js
src/anaxigraph/dashboard/reassessment.css
src/anaxigraph/dashboard/repository-view.js
src/anaxigraph/dashboard/styles.css
src/anaxigraph/dashboard/theme-boot.js
src/anaxigraph/dashboard/themes.css
src/anaxigraph/dashboard/workflow-events.js
src/anaxigraph/persistence/__init__.py
src/anaxigraph/persistence/architecture_evidence.py
src/anaxigraph/persistence/compatibility_compaction.py
src/anaxigraph/persistence/file_read.py
src/anaxigraph/persistence/finding_query.py
src/anaxigraph/persistence/finding_read.py
src/anaxigraph/persistence/graph_delta_read.py
src/anaxigraph/persistence/graph_index.py
src/anaxigraph/persistence/graph_neighborhood_read.py
src/anaxigraph/persistence/graph_node_detail.py
src/anaxigraph/persistence/graph_page_read.py
src/anaxigraph/persistence/graph_projection.py
src/anaxigraph/persistence/graph_query_architecture.py
src/anaxigraph/persistence/graph_query_sql.py
src/anaxigraph/persistence/graph_read.py
src/anaxigraph/persistence/group_read.py
src/anaxigraph/persistence/index_backup.py
src/anaxigraph/persistence/index_doctor.py
src/anaxigraph/persistence/index_facade.py
src/anaxigraph/persistence/index_initialization.py
src/anaxigraph/persistence/index_parity.py
src/anaxigraph/persistence/index_temporal_health.py
src/anaxigraph/persistence/migrations.py
src/anaxigraph/persistence/module_read.py
src/anaxigraph/persistence/overview_read.py
src/anaxigraph/persistence/pattern_candidate_read.py
src/anaxigraph/persistence/pattern_evaluation_read.py
src/anaxigraph/persistence/pattern_evidence_aggregate.py
src/anaxigraph/persistence/pattern_evidence_features.py
src/anaxigraph/persistence/pattern_evidence_inputs.py
src/anaxigraph/persistence/pattern_evidence_read.py
src/anaxigraph/persistence/row_decoding.py
src/anaxigraph/persistence/schema.py
src/anaxigraph/persistence/search_read.py
src/anaxigraph/persistence/semantic_claim_carry.py
src/anaxigraph/persistence/semantic_evidence.py
src/anaxigraph/persistence/semantic_fact_references.py
src/anaxigraph/persistence/semantic_taxonomy_carry.py
src/anaxigraph/persistence/semantic_taxonomy_read.py
src/anaxigraph/persistence/snapshot_catalog.py
src/anaxigraph/persistence/snapshot_projection.py
src/anaxigraph/persistence/temporal_facts.py
src/anaxigraph/persistence/temporal_files.py
src/anaxigraph/persistence/temporal_hashing.py
src/anaxigraph/persistence/temporal_reads.py
src/anaxigraph/persistence/temporal_reconstruction.py
src/anaxigraph/persistence/temporal_relationships.py
src/anaxigraph/persistence/temporal_schema.py
tests/test_agent.py
tests/test_agent_decision.py
tests/test_agent_decision_handoff_language.py
tests/test_agent_decision_language.py
tests/test_agent_decision_payload.py
tests/test_agent_decomposition.py
tests/test_agent_finding.py
tests/test_agent_package.py
tests/test_agent_task_path.py
tests/test_analyzer_invalidation.py
tests/test_analyzers.py
tests/test_api_mcp.py
tests/test_api_operations.py
tests/test_architecture_charter.py
tests/test_architecture_reassessment.py
tests/test_architecture_rule_language.py
tests/test_architecture_vocabulary.py
tests/test_baseline_adapter.py
tests/test_benchmarks.py
tests/test_cli_agent_authority.py
tests/test_cli_commands.py
tests/test_cli_process.py
tests/test_config.py
tests/test_container_sidecar_smoke.py
tests/test_core_loop_scale.py
tests/test_environment_doctor.py
tests/test_finding_history.py
tests/test_finding_language.py
tests/test_finding_query.py
tests/test_fresh_eyes_transports.py
tests/test_graph_query.py
tests/test_graph_scale_benchmark.py
tests/test_guidance_language.py
tests/test_history_correctness.py
tests/test_history_jobs.py
tests/test_history_registry.py
tests/test_history_timeline.py
tests/test_index_authority.py
tests/test_index_doctor.py
tests/test_index_recovery.py
tests/test_javascript_parser.py
tests/test_local_runtime.py
tests/test_mcp_runtime.py
tests/test_migration_safety.py
tests/test_migrations.py
tests/test_onboarding.py
tests/test_onboarding_clients.py
tests/test_onboarding_detection.py
tests/test_onboarding_docs.py
tests/test_pattern_candidate_cli.py
tests/test_pattern_candidate_integration.py
tests/test_pattern_candidate_language.py
tests/test_pattern_candidate_query.py
tests/test_pattern_candidate_service.py
tests/test_pattern_candidates.py
tests/test_pattern_catalog.py
tests/test_pattern_evaluation_contract.py
tests/test_pattern_evidence.py
tests/test_pattern_language.py
tests/test_pattern_query.py
tests/test_pattern_targets.py
tests/test_product_names.py
tests/test_quality_checks.py
tests/test_release_artifacts.py
tests/test_scan_control.py
tests/test_scan_preparation.py
tests/test_scanner.py
tests/test_search_projection.py
tests/test_self_analysis_gate.py
tests/test_semantic.py
tests/test_semantic_agent_paging.py
tests/test_semantic_background.py
tests/test_semantic_execution.py
tests/test_semantic_failure_telemetry.py
tests/test_semantic_file_language.py
tests/test_semantic_fresh_eyes.py
tests/test_semantic_identity.py
tests/test_semantic_job_state.py
tests/test_semantic_lifecycle_scale.py
tests/test_semantic_mcp.py
tests/test_semantic_parallel.py
tests/test_semantic_queue_control.py
tests/test_semantic_readiness.py
tests/test_semantic_refresh_coordinator.py
tests/test_semantic_remote_recovery.py
tests/test_semantic_service.py
tests/test_semantic_service_agent_queries.py
tests/test_semantic_services.py
tests/test_semantic_status_language.py
tests/test_semantic_taxonomy.py
tests/test_storage.py
tests/test_temporal_checkpoints.py
tests/test_temporal_facts.py
tests/test_trend_service.py
tests/test_understanding.py
tests/test_understanding_agent.py