LICENSE
README.md
pyproject.toml
src/rettxmutation.egg-info/PKG-INFO
src/rettxmutation.egg-info/SOURCES.txt
src/rettxmutation.egg-info/dependency_links.txt
src/rettxmutation.egg-info/requires.txt
src/rettxmutation.egg-info/top_level.txt
src/rettxmutation/adapters/__init__.py
src/rettxmutation/adapters/variant_validator_adapter.py
src/rettxmutation/adapters/variant_validator_mapper.py
src/rettxmutation/core/__init__.py
src/rettxmutation/core/config.py
src/rettxmutation/core/config_factory.py
src/rettxmutation/core/env_secret_loader.py
src/rettxmutation/core/secret_loader.py
src/rettxmutation/models/__init__.py
src/rettxmutation/models/context.py
src/rettxmutation/models/document.py
src/rettxmutation/models/gene_assembly.py
src/rettxmutation/models/gene_models.py
src/rettxmutation/models/gene_registry.py
src/rettxmutation/models/mutation_model.py
src/rettxmutation/ocr/__init__.py
src/rettxmutation/ocr/exceptions.py
src/rettxmutation/ocr/ocr_service.py
src/rettxmutation/ocr/ocr_utils.py
src/rettxmutation/openai_agent/__init__.py
src/rettxmutation/openai_agent/base_agent.py
src/rettxmutation/openai_agent/embedding_client.py
src/rettxmutation/openai_agent/exceptions.py
src/rettxmutation/openai_agent/hardcoded_prompts.py
src/rettxmutation/openai_agent/hardcoded_yaml_configs.py
src/rettxmutation/openai_agent/mutation_extraction_agent.py
src/rettxmutation/openai_agent/summarization_agent.py
src/rettxmutation/openai_agent/utils.py
src/rettxmutation/openai_agent/validation_agent.py
src/rettxmutation/openai_agent/prompts/__init__.py
src/rettxmutation/openai_agent/prompts/extraction/__init__.py
src/rettxmutation/openai_agent/prompts/extraction/extract_mutations.yaml
src/rettxmutation/openai_agent/prompts/shared/__init__.py
src/rettxmutation/openai_agent/prompts/shared/latest_transcripts.json
src/rettxmutation/openai_agent/prompts/summarization/__init__.py
src/rettxmutation/openai_agent/prompts/summarization/correct_summary_mistakes.yaml
src/rettxmutation/openai_agent/prompts/summarization/summarize_report.yaml
src/rettxmutation/openai_agent/prompts/validation/__init__.py
src/rettxmutation/openai_agent/prompts/validation/validate_document.yaml
src/rettxmutation/pipeline/__init__.py
src/rettxmutation/pipeline/config_types.py
src/rettxmutation/pipeline/exceptions.py
src/rettxmutation/pipeline/pipeline_factory.py
src/rettxmutation/pipeline/rettx_pipeline.py
src/rettxmutation/services/__init__.py
src/rettxmutation/services/embedding_service.py
src/rettxmutation/services/mutation_service.py
src/rettxmutation/services/mutation_tokenizator.py
src/rettxmutation/services/mutation_validator.py
src/rettxmutation/services/text_analytics.py
src/rettxmutation/utils/__init__.py
src/rettxmutation/utils/hgvs_descriptor.py
src/rettxmutation/utils/text_util.py
tests/test_gene_model.py
tests/test_models_document.py
tests/test_ocr.py
tests/test_openai_agents.py
tests/test_pipeline_integration.py
tests/test_text_analytics.py