README.md
pyproject.toml
src/niiflow/preproc/__init__.py
src/niiflow/preproc/cli/__init__.py
src/niiflow/preproc/cli/commands.py
src/niiflow/preproc/cli/main.py
src/niiflow/preproc/config/__init__.py
src/niiflow/preproc/config/load.py
src/niiflow/preproc/data/__init__.py
src/niiflow/preproc/data/explorer_factory.py
src/niiflow/preproc/data/read_from_file.py
src/niiflow/preproc/data/types.py
src/niiflow/preproc/functional/__init__.py
src/niiflow/preproc/functional/array/__init__.py
src/niiflow/preproc/functional/array/arithmetic.py
src/niiflow/preproc/functional/array/croppad.py
src/niiflow/preproc/functional/array/intensity_normalization.py
src/niiflow/preproc/functional/array/masks.py
src/niiflow/preproc/functional/array/utils.py
src/niiflow/preproc/functional/image/__init__.py
src/niiflow/preproc/functional/image/arithmetic.py
src/niiflow/preproc/functional/image/bias_field.py
src/niiflow/preproc/functional/image/croppad.py
src/niiflow/preproc/functional/image/denoising.py
src/niiflow/preproc/functional/image/intensity_normalization.py
src/niiflow/preproc/functional/image/masks.py
src/niiflow/preproc/functional/image/pipelines.py
src/niiflow/preproc/functional/image/registration.py
src/niiflow/preproc/functional/image/reorientation.py
src/niiflow/preproc/functional/image/resampling.py
src/niiflow/preproc/functional/image/skull_stripping.py
src/niiflow/preproc/functional/image/utils.py
src/niiflow/preproc/pipelines/__init__.py
src/niiflow/preproc/pipelines/dynamic_pipeline.py
src/niiflow/preproc/pipelines/pipeline_stages/__init__.py
src/niiflow/preproc/pipelines/pipeline_stages/arithmetic.py
src/niiflow/preproc/pipelines/pipeline_stages/bias_field.py
src/niiflow/preproc/pipelines/pipeline_stages/compose.py
src/niiflow/preproc/pipelines/pipeline_stages/croppad.py
src/niiflow/preproc/pipelines/pipeline_stages/denoising.py
src/niiflow/preproc/pipelines/pipeline_stages/intensity_normalization.py
src/niiflow/preproc/pipelines/pipeline_stages/masks.py
src/niiflow/preproc/pipelines/pipeline_stages/pipeline_stage.py
src/niiflow/preproc/pipelines/pipeline_stages/pipeline_stage_factory.py
src/niiflow/preproc/pipelines/pipeline_stages/pipelines.py
src/niiflow/preproc/pipelines/pipeline_stages/qc.py
src/niiflow/preproc/pipelines/pipeline_stages/registration.py
src/niiflow/preproc/pipelines/pipeline_stages/resampling.py
src/niiflow/preproc/pipelines/pipeline_stages/skull_stripping.py
src/niiflow/preproc/pipelines/pipeline_stages/utility.py
src/niiflow/preproc/staging/__init__.py
src/niiflow/preproc/staging/dynamic_referencing.py
src/niiflow/preproc/staging/file_stager.py
src/niiflow/preproc/staging/modifiers.py
src/niiflow/preproc/staging/search.py
src/niiflow/preproc/staging/stager.py
src/niiflow/preproc/staging/stager_factory.py
src/niiflow/preproc/staging/types.py
src/niiflow/preproc/staging/utility.py
src/niiflow/preproc/staging/validation.py
src/niiflow/preproc/utils/__init__.py
src/niiflow/preproc/utils/file.py
src/niiflow/preproc/utils/misc.py
src/niiflow/preproc/workflows/__init__.py
src/niiflow/preproc/workflows/dynamic_workflow.py
src/niiflow/preproc/workflows/logging_manager.py
src/niiflow/preproc/workflows/logging_utils.py
src/niiflow/preproc/workflows/mixins.py
src/niiflow/preproc/workflows/plan.py
src/niiflow/preproc/workflows/types.py
src/niiflow/preproc/workflows/workflow.py
src/niiflow/preproc/workflows/workflow_factory.py
src/niiflow_preproc.egg-info/PKG-INFO
src/niiflow_preproc.egg-info/SOURCES.txt
src/niiflow_preproc.egg-info/dependency_links.txt
src/niiflow_preproc.egg-info/entry_points.txt
src/niiflow_preproc.egg-info/requires.txt
src/niiflow_preproc.egg-info/top_level.txt
tests/test_preproc_cli_commands.py
tests/test_preproc_cli_main.py
tests/test_preproc_config_load.py
tests/test_preproc_data_explorer_factory.py
tests/test_preproc_data_read_from_file.py
tests/test_preproc_func_arithmetic.py
tests/test_preproc_func_bias_field.py
tests/test_preproc_func_croppad.py
tests/test_preproc_func_denoising.py
tests/test_preproc_func_intensity_normalization.py
tests/test_preproc_func_masks.py
tests/test_preproc_func_pipelines.py
tests/test_preproc_func_registration.py
tests/test_preproc_func_reorientation.py
tests/test_preproc_func_resampling.py
tests/test_preproc_func_skull_stripping.py
tests/test_preproc_import.py
tests/test_preproc_pipeline_stage_factory.py
tests/test_preproc_pipeline_stages_arithmetic.py
tests/test_preproc_pipeline_stages_base.py
tests/test_preproc_pipeline_stages_compose.py
tests/test_preproc_pipeline_stages_masks.py
tests/test_preproc_pipeline_stages_qc.py
tests/test_preproc_pipeline_stages_shipped_shared.py
tests/test_preproc_pipeline_stages_utility.py
tests/test_preproc_pipelines_dynamic.py
tests/test_preproc_staging_base.py
tests/test_preproc_staging_dynamic_referencing.py
tests/test_preproc_staging_factory.py
tests/test_preproc_staging_file_stager.py
tests/test_preproc_staging_utility.py
tests/test_preproc_utils_file.py
tests/test_preproc_workflows_base.py
tests/test_preproc_workflows_dynamic.py
tests/test_preproc_workflows_factory.py
tests/test_preproc_workflows_mixins.py
tests/test_preproc_workflows_plan.py