.gitignore
LICENSE.txt
README.md
main.py
requirement.txt
setup.py
config/__init__.py
config/fake_reconstruction_configs/default.json
config/fake_reconstruction_configs/tmp/readme.txt
data/demo/gold.swc
data/demo/test.swc
data/example_selected/a.swc
data/example_selected/b.swc
data/example_selected/c.swc
data/example_selected/d.swc
data/example_selected/e.swc
data/example_selected/f.swc
data/example_selected/g.swc
data/example_selected/readme
data/std_test_data/6656_2304_21504/6656_2304_21504_6656_2304_21504.swc
data/std_test_data/6656_2304_21504/6656_2304_21504_default.swc
data/std_test_data/6656_2304_21504/6656_2304_21504_gold.swc
data/std_test_data/6656_2304_22016/6656_2304_22016_default.swc
data/std_test_data/6656_2304_22016/6656_2304_22016_gold.swc
data/std_test_data/6656_2816_21504/6656_2816_21504_default.swc
data/std_test_data/6656_2816_21504/6656_2816_21504_gold.swc
data/std_test_data/6656_2816_22016/6656_2816_22016_default.swc
data/std_test_data/6656_2816_22016/6656_2816_22016_gold.swc
data/std_test_data/geo_fake_data1/gold.swc
data/std_test_data/geo_fake_data1/std_critical_node.json
data/std_test_data/geo_fake_data1/std_diadem.json
data/std_test_data/geo_fake_data1/std_length.json
data/std_test_data/geo_fake_data1/std_ssd.json
data/std_test_data/geo_fake_data1/test.swc
data/std_test_data/geo_fake_data2/gold.swc
data/std_test_data/geo_fake_data2/std_critical_node.json
data/std_test_data/geo_fake_data2/std_diadem.json
data/std_test_data/geo_fake_data2/std_length.json
data/std_test_data/geo_fake_data2/std_ssd.json
data/std_test_data/geo_fake_data2/test.swc
data/std_test_data/geo_fake_data3/gold.swc
data/std_test_data/geo_fake_data3/std_critical_node.json
data/std_test_data/geo_fake_data3/std_diadem.json
data/std_test_data/geo_fake_data3/std_length.json
data/std_test_data/geo_fake_data3/std_ssd.json
data/std_test_data/geo_fake_data3/test.swc
data/std_test_data/geo_fake_data4/gold.swc
data/std_test_data/geo_fake_data4/std_critical_node.json
data/std_test_data/geo_fake_data4/std_diadem.json
data/std_test_data/geo_fake_data4/std_length.json
data/std_test_data/geo_fake_data4/std_ssd.json
data/std_test_data/geo_fake_data4/test.swc
data/std_test_data/geo_fake_data5/gold.swc
data/std_test_data/geo_fake_data5/std_critical_node.json
data/std_test_data/geo_fake_data5/std_diadem.json
data/std_test_data/geo_fake_data5/std_length.json
data/std_test_data/geo_fake_data5/std_ssd.json
data/std_test_data/geo_fake_data5/test.swc
data/std_test_data/geo_fake_data6/gold.swc
data/std_test_data/geo_fake_data6/std_critical_node.json
data/std_test_data/geo_fake_data6/std_diadem.json
data/std_test_data/geo_fake_data6/std_length.json
data/std_test_data/geo_fake_data6/std_ssd.json
data/std_test_data/geo_fake_data6/test.swc
data/std_test_data/topo_fake_data1/gold.swc
data/std_test_data/topo_fake_data1/std_critical_node.json
data/std_test_data/topo_fake_data1/std_diadem.json
data/std_test_data/topo_fake_data1/std_length.json
data/std_test_data/topo_fake_data1/std_ssd.json
data/std_test_data/topo_fake_data1/test.swc
data/std_test_data/topo_fake_data2/gold.swc
data/std_test_data/topo_fake_data2/std_critical_node.json
data/std_test_data/topo_fake_data2/std_diadem.json
data/std_test_data/topo_fake_data2/std_length.json
data/std_test_data/topo_fake_data2/std_ssd.json
data/std_test_data/topo_fake_data2/test.swc
data/std_test_data/topo_fake_data3/gold.swc
data/std_test_data/topo_fake_data3/std_critical_node.json
data/std_test_data/topo_fake_data3/std_diadem.json
data/std_test_data/topo_fake_data3/std_length.json
data/std_test_data/topo_fake_data3/std_ssd.json
data/std_test_data/topo_fake_data3/test.swc
data/std_test_data/topo_fake_data4/gold.swc
data/std_test_data/topo_fake_data4/std.json
data/std_test_data/topo_fake_data4/std_critical_node.json
data/std_test_data/topo_fake_data4/std_diadem.json
data/std_test_data/topo_fake_data4/std_length.json
data/std_test_data/topo_fake_data4/std_ssd.json
data/std_test_data/topo_fake_data4/test.swc
docs/mkdocs.yml
docs/docs/index.md
docs/docs/install.md
docs/docs/optimize.md
docs/docs/tutorial.md
docs/docs/pics/docs-badge.svg
docs/docs/pics/img1.png
docs/docs/pics/img2.png
docs/docs/pics/img3.png
docs/docs/swc/gold.swc
docs/docs/swc/test.swc
pyneval/__init__.py
pyneval.egg-info/PKG-INFO
pyneval.egg-info/SOURCES.txt
pyneval.egg-info/dependency_links.txt
pyneval.egg-info/entry_points.txt
pyneval.egg-info/requires.txt
pyneval.egg-info/top_level.txt
pyneval/cli/__init__.py
pyneval/cli/pyneval.py
pyneval/cli/pyneval_tools.py
pyneval/errors/__init__.py
pyneval/errors/exceptions.py
pyneval/io/__init__.py
pyneval/io/read_json.py
pyneval/io/read_swc.py
pyneval/io/read_tiff.py
pyneval/io/swc_writer.py
pyneval/metric/__init__.py
pyneval/metric/critical_node_metric.py
pyneval/metric/diadem_metric.py
pyneval/metric/length_metric.py
pyneval/metric/link_metric.py
pyneval/metric/ssd_metric.py
pyneval/metric/volume_metric.py
pyneval/metric/utils/__init__.py
pyneval/metric/utils/anno_utils.py
pyneval/metric/utils/basic_utils.py
pyneval/metric/utils/bigraph_maxmatch_utils.py
pyneval/metric/utils/bin_utils.py
pyneval/metric/utils/config_utils.py
pyneval/metric/utils/diadam_match_utils.py
pyneval/metric/utils/edge_match_utils.py
pyneval/metric/utils/km_utils.py
pyneval/metric/utils/metric_manager.py
pyneval/metric/utils/point_match_utils.py
pyneval/metric/utils/tiff_utils.py
pyneval/metric/utils/klib/TiffFile.py
pyneval/metric/utils/klib/__init__.py
pyneval/metric/utils/klib/baseio.py
pyneval/metric/utils/klib/simulator.py
pyneval/metric/utils/klib/glib/._DrawSimulationSWCModel.py
pyneval/metric/utils/klib/glib/._GANRefinerParser.py
pyneval/metric/utils/klib/glib/._ImageEvaluation.py
pyneval/metric/utils/klib/glib/._Reader.py
pyneval/metric/utils/klib/glib/._Utils.py
pyneval/metric/utils/klib/glib/._Writer.py
pyneval/metric/utils/klib/glib/.tags
pyneval/metric/utils/klib/glib/.tags1
pyneval/metric/utils/klib/glib/ConvPlotTools.py
pyneval/metric/utils/klib/glib/Converter.py
pyneval/metric/utils/klib/glib/Draw2DTools.py
pyneval/metric/utils/klib/glib/Draw3DStack.py
pyneval/metric/utils/klib/glib/Draw3DTools.py
pyneval/metric/utils/klib/glib/DrawSimulationSWC.py
pyneval/metric/utils/klib/glib/DrawSimulationSWCModel.py
pyneval/metric/utils/klib/glib/EvaluateModel.py
pyneval/metric/utils/klib/glib/GANParser.py
pyneval/metric/utils/klib/glib/GANRefinerParser.py
pyneval/metric/utils/klib/glib/ImageEvaluation.py
pyneval/metric/utils/klib/glib/ImageUtils.py
pyneval/metric/utils/klib/glib/Inputer.py
pyneval/metric/utils/klib/glib/Label.py
pyneval/metric/utils/klib/glib/LabelDefinition.py
pyneval/metric/utils/klib/glib/Mail.py
pyneval/metric/utils/klib/glib/Obj3D.py
pyneval/metric/utils/klib/glib/Parser.py
pyneval/metric/utils/klib/glib/PlotTools.py
pyneval/metric/utils/klib/glib/Reader.py
pyneval/metric/utils/klib/glib/SWCExtractor.py
pyneval/metric/utils/klib/glib/SamplingTools.py
pyneval/metric/utils/klib/glib/SlidingWindow.py
pyneval/metric/utils/klib/glib/TiffFile.py
pyneval/metric/utils/klib/glib/Transformation2D.py
pyneval/metric/utils/klib/glib/Transformation3D.py
pyneval/metric/utils/klib/glib/Transformations.py
pyneval/metric/utils/klib/glib/Untitled.ipynb
pyneval/metric/utils/klib/glib/Utils.py
pyneval/metric/utils/klib/glib/Writer.py
pyneval/metric/utils/klib/glib/__init__.py
pyneval/metric/utils/klib/glib/docopt.py
pyneval/metric/utils/klib/glib/.ipynb_checkpoints/Untitled-checkpoint.ipynb
pyneval/metric/utils/klib/glib/pyimagesearch/__init__.py
pyneval/metric/utils/klib/glib/pyimagesearch/helpers.py
pyneval/metric/utils/klib/glib/pyimagesearch/imutils.py
pyneval/metric/utils/klib/glib/tflib/._plot.py
pyneval/metric/utils/klib/glib/tflib/__init__.py
pyneval/metric/utils/klib/glib/tflib/cifar10.py
pyneval/metric/utils/klib/glib/tflib/inception_score.py
pyneval/metric/utils/klib/glib/tflib/mnist.py
pyneval/metric/utils/klib/glib/tflib/plot.py
pyneval/metric/utils/klib/glib/tflib/save_images.py
pyneval/metric/utils/klib/glib/tflib/small_imagenet.py
pyneval/metric/utils/klib/glib/tflib/ops/__init__.py
pyneval/metric/utils/klib/glib/tflib/ops/batchnorm.py
pyneval/metric/utils/klib/glib/tflib/ops/cond_batchnorm.py
pyneval/metric/utils/klib/glib/tflib/ops/conv1d.py
pyneval/metric/utils/klib/glib/tflib/ops/conv2d.py
pyneval/metric/utils/klib/glib/tflib/ops/conv3d.py
pyneval/metric/utils/klib/glib/tflib/ops/deconv2d.py
pyneval/metric/utils/klib/glib/tflib/ops/deconv3d.py
pyneval/metric/utils/klib/glib/tflib/ops/layernorm.py
pyneval/metric/utils/klib/glib/tflib/ops/linear.py
pyneval/model/__init__.py
pyneval/model/binary_node.py
pyneval/model/euclidean_point.py
pyneval/model/swc_node.py
pyneval/tools/__init__.py
pyneval/tools/overlap_detect.py
pyneval/tools/re_sample.py
pyneval/tools/swc_cut.py
pyneval/tools/tiff_cut.py
pyneval/tools/optimize/SA.py
pyneval/tools/optimize/__init__.py
pyneval/tools/optimize/opt_config.json
pyneval/tools/optimize/optimize.py
recipe-pyneval/meta.yaml
test/__init__.py
test/data_builder/dbuilder.py
test/test_model/__init__.py
test/test_model/cprofile_test.py
test/test_model/eculidean_test.py
test/test_model/length_metric_test.py
test/test_model/standard_test.py
test/test_model/test_convert_to_binary.py
test/test_model/test_diadem.py
test/test_model/test_length_metric_2.py
test/test_model/test_random.py
test/test_model/critical_node_metric/critical_node_test.py
test/test_model/data_analyse/data_analyse.py
test/test_model/diadem_metric/__init__.py
test/test_model/diadem_metric/diadem_tot.py
test/test_model/diadem_metric/get_best_match/__init__.py
test/test_model/diadem_metric/get_best_match/test_get_best_match.py
test/test_model/diadem_metric/get_nearby_node_list/__init__.py
test/test_model/diadem_metric/get_nearby_node_list/test_get_nearby_node_list.py
test/test_model/diadem_metric/is_diadem_match/__init__.py
test/test_model/diadem_metric/is_diadem_match/test_is_diadem_match.py
test/test_model/length_metric/__init__.py
test/test_model/length_metric/length_metric_test.py
test/test_model/length_metric/get_lca_length/__init__.py
test/test_model/length_metric/get_lca_length/test_get_lca_length.py
test/test_model/length_metric/get_nearby_edges/__init__.py
test/test_model/length_metric/get_nearby_edges/test_get_nearby_edges.py
test/test_model/length_metric/is_route_clean/__init__.py
test/test_model/length_metric/is_route_clean/test_is_root_clean.py
test/test_model/ssd_metric/ssd_metric_test.py
test/test_model/visualize/bar_visual.py
test/test_model/visualize/linechart_visual.py