Installation

Requirements

The following dependencies are needed to run the code (as-written). Some of these could be removed, but the code was written with my research results in mind, and as such, has some dependencies that make things match my personal preferences (such as seaborn). Some details on installing them are given below:

Package Source PyPI
numpy Source PyPI
Opencv Source  
PyQt4 Source  
matplotlib Source PyPI
scikit-image Source PyPI
tqdm Source PyPI
seaborn Source PyPI
statsmodels Source PyPI

Development Version Installation

Currently, only the development version is capable of installation. The latest version of the code should be available in my personal repository, in the FIB-SEM/fibtracking folder. To get this version installed on your system, clone the repository, and then install with pip:

$ git clone https://bitbucket.org/jat255/jat255-python-modules.git
$ cd jat255-python-modules/FIB-SEM/fibtracking/
$ pip install -e ./