LICENSE
README.md
pyproject.toml
evehap/__init__.py
evehap/cli.py
evehap.egg-info/PKG-INFO
evehap.egg-info/SOURCES.txt
evehap.egg-info/dependency_links.txt
evehap.egg-info/entry_points.txt
evehap.egg-info/requires.txt
evehap.egg-info/top_level.txt
evehap/adapters/__init__.py
evehap/adapters/bam.py
evehap/adapters/base.py
evehap/adapters/fasta.py
evehap/adapters/fastq.py
evehap/adapters/hsd.py
evehap/adapters/microarray.py
evehap/adapters/vcf.py
evehap/core/__init__.py
evehap/core/classifier.py
evehap/core/damage.py
evehap/core/phylotree.py
evehap/core/profile.py
evehap/core/reference.py
evehap/data/phylotree/tree-rcrs.xml
evehap/data/phylotree/tree-rsrs.xml
evehap/data/phylotree/weights-rcrs.txt
evehap/data/phylotree/weights-rsrs.txt
evehap/data/reference/rCRS.fasta
evehap/output/__init__.py
evehap/output/report.py
evehap/output/result.py
tests/test_cli.py
tests/test_damage_filter.py