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The content of the Bioregistry's database is split into three sections. See the JSON schema page for further documentation on their format.
The registry can be downloaded as:
The manually curated portions of these data are available under the CC0 1.0 Universal License. Aggregated data are redistributed under their original licenses.
More information can be found here.
The metaregistry can be downloaded as:
The entirety of the metaregistry is manually curated and is available under the CC0 1.0 Universal License.
More information can be found here.
The collections can be downloaded as:
The entirety of the collections is manually curated and is available under the CC0 1.0 Universal License.
More information can be found here.
The combine registry, metaregistry, and collections can be downloaded as RDF in the following formats. See the RDF schema page for further documentation.
The manually curated portions of these data are available under the CC0 1.0 Universal License. Aggregated data are redistributed under their original licenses.
More information can be found here.
The Bioregistry Regular Expression Report uses PyOBO to check how consistent all of the regular expression patterns are with the actual identifiers from databases that are parsed by PyOBO. This contains most entries from the OBO Foundry that are still accessible as well as several additional resources such as HGNC, UniProt, etc. The automatically generated/updated report is available here.
Related to the RDF dump, there is preliminary work in generating a knowledge graph around the information in the Bioregistry, including the relations between resources, providers, and registries. It can be viewed on the Network Data Exchange (NDEx).
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