LICENSE
README.md
pyproject.toml
setup.py
src/benchmarks/__init__.py
src/cuteHap/CommandRunner.py
src/cuteHap/__init__.py
src/cuteHap/beam.py
src/cuteHap/cuteHap
src/cuteHap/cuteHap_Description.py
src/cuteHap/cuteHap_genotype.py
src/cuteHap/cuteHap_resolveCOMOSAIC.py
src/cuteHap/cuteHap_resolveDUP.py
src/cuteHap/cuteHap_resolveINDEL.py
src/cuteHap/cuteHap_resolveINV.py
src/cuteHap/cuteHap_resolveMOSAIC.py
src/cuteHap/cuteHap_resolveTRA.py
src/cuteHap/genotype_improve.c
src/cuteHap/genotype_improve.pyx
src/cuteHap/prove_func.c
src/cuteHap/prove_func.pyx
src/cutehap.egg-info/PKG-INFO
src/cutehap.egg-info/SOURCES.txt
src/cutehap.egg-info/dependency_links.txt
src/cutehap.egg-info/not-zip-safe
src/cutehap.egg-info/requires.txt
src/cutehap.egg-info/top_level.txt