Metadata-Version: 2.4
Name: Ekl_mgenomics
Version: 1.0
Summary: A tool for MAG taxonomy assignment using Blastn
Author: Eklavya Kumar
Author-email: eklavyakumar1602@gmail.com
Description-Content-Type: text/markdown
Requires-Dist: biopython
Dynamic: author
Dynamic: author-email
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Dynamic: description-content-type
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# Ekl_mgenomics

A tool for MAG (Metagenome Assembled Genome) taxonomy analysis using Blastn.

## Installation

pip install Ekl-mgenomics

## Usage

ekl_tax "path_to_your_fasta_file" "path_to_where_you-Want_output_folder"  "path_to_local_db"

If running remote blast -----> omit writting the three parameter.

If IndexError---> Go to that chunks blast file and delte the malfunctioned file and again do [ekl_tax yourgenome.fasta]
Sometimes blast itself makes error in sending the file in correct formate (rarely).

## Requirements
- BLAST+ must be installed on your system
- Internet connection for remote BLAST and Entrez queries

## What it does

1. Splits your fasta file into 200kb chunks per contig
2. BLASTs each chunk against NCBI nt database
3. Assigns taxonomy to each contig 
4. Writes OrganismTaxonomy.tsv with full results
5. Stores the results and files in a folder.
6.Can run both local db and remote db 

## Author

Eklavya Kumar
