.gitignore
LICENSE
README.md
requirements.txt
setup.py
plasmidCC/__init__.py
plasmidCC/plasmid_CC.py
plasmidCC/version.py
plasmidCC.egg-info/PKG-INFO
plasmidCC.egg-info/SOURCES.txt
plasmidCC.egg-info/dependency_links.txt
plasmidCC.egg-info/entry_points.txt
plasmidCC.egg-info/requires.txt
plasmidCC.egg-info/top_level.txt
plasmidCC/databases/.gitkeep
plasmidCC/scripts/__init__.py
plasmidCC/scripts/download_centrifuge_db.py
plasmidCC/scripts/extract_nodes.py
plasmidCC/scripts/process_centrifuge.py
plasmidCC/scripts/run_centrifuge.py
plasmidCC/scripts/utils.py
test/test_ecoli.gfa