Metadata-Version: 2.4
Name: albis
Version: 0.1.0
Summary: Albis - A muLti-resolution Biological In-silico Simulator for 3D spatial transcriptomics.
Author: Jan Matthias, Jianing Yao, Stephanie Hicks
License-Expression: MIT
Project-URL: Homepage, https://github.com/JanMatthias1/Albis
Project-URL: Documentation, https://github.com/JanMatthias1/Albis#readme
Project-URL: Repository, https://github.com/JanMatthias1/Albis
Project-URL: Issues, https://github.com/JanMatthias1/Albis/issues
Keywords: spatial-transcriptomics,simulation,anndata,multi-resolution
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: anndata>=0.10
Requires-Dist: numpy>=1.23
Requires-Dist: scipy>=1.10
Provides-Extra: plot
Requires-Dist: matplotlib>=3.7; extra == "plot"
Provides-Extra: tutorial
Requires-Dist: ipykernel>=6; extra == "tutorial"
Requires-Dist: nbformat>=5; extra == "tutorial"
Requires-Dist: notebook>=7; extra == "tutorial"
Provides-Extra: dev
Requires-Dist: pytest>=8; extra == "dev"
Dynamic: license-file

# Albis

Albis — A muLti-resolution Biological In-silico Simulator — generates
synthetic 3D spatial-transcriptomics data as AnnData objects, with
cell, bin, and spot resolutions.

## Installation

```bash
pip install albis
```

With plotting support:

```bash
pip install "albis[plot]"
```

## Documentation and tutorials

See the [GitHub repository](https://github.com/JanMatthias1/Albis)
for usage instructions, parameter descriptions, and tutorials.
