__init__(self, dict|str init_dict_json) | SMS_BP.simulate_cell.Simulate_cells | |
_check_init_dict(self) | SMS_BP.simulate_cell.Simulate_cells | protected |
_condensates | SMS_BP.simulate_cell.Simulate_cells | protected |
_convert_frame_to_time(self, int frame, int exposure_time, int interval_time, int oversample_motion_time) | SMS_BP.simulate_cell.Simulate_cells | protected |
_convert_track_dict_msd(self, tracks) | SMS_BP.simulate_cell.Simulate_cells | protected |
_convert_track_dict_points_per_frame(self, tracks, movie_frames) | SMS_BP.simulate_cell.Simulate_cells | protected |
_create_map(self, np.ndarray initial_map, dict points_per_frame, str axial_function) | SMS_BP.simulate_cell.Simulate_cells | protected |
_create_track_pop_dict(self, np.ndarray simulation_cube) | SMS_BP.simulate_cell.Simulate_cells | protected |
_define_space(self, dims=(100, 100), movie_frames=500) | SMS_BP.simulate_cell.Simulate_cells | protected |
_format_points_per_frame(self, points_per_frame) | SMS_BP.simulate_cell.Simulate_cells | protected |
_point_per_time_selection(self, dict points_per_time) | SMS_BP.simulate_cell.Simulate_cells | protected |
_read_json(self, str json_file) | SMS_BP.simulate_cell.Simulate_cells | protected |
_update_units(self, unit, orig_type, update_type) | SMS_BP.simulate_cell.Simulate_cells | protected |
axial_detection_range_pix | SMS_BP.simulate_cell.Simulate_cells | |
condensate_diffusion_updated | SMS_BP.simulate_cell.Simulate_cells | |
condensates | SMS_BP.simulate_cell.Simulate_cells | |
condensates(self) | SMS_BP.simulate_cell.Simulate_cells | |
condensates(self, dict condensates) | SMS_BP.simulate_cell.Simulate_cells | |
diffusion_transition_matrix | SMS_BP.simulate_cell.Simulate_cells | |
exposure_time | SMS_BP.simulate_cell.Simulate_cells | |
frame_count | SMS_BP.simulate_cell.Simulate_cells | |
get_and_save_sim(self, str cd, str img_name, str subsegment_type, int sub_frame_num, **kwargs) | SMS_BP.simulate_cell.Simulate_cells | |
get_cell(self) | SMS_BP.simulate_cell.Simulate_cells | |
hurst_transition_matrix | SMS_BP.simulate_cell.Simulate_cells | |
init_dict | SMS_BP.simulate_cell.Simulate_cells | |
interval_time | SMS_BP.simulate_cell.Simulate_cells | |
oversample_motion_time | SMS_BP.simulate_cell.Simulate_cells | |
pixel_size_pix | SMS_BP.simulate_cell.Simulate_cells | |
psf_sigma_pix | SMS_BP.simulate_cell.Simulate_cells | |
total_time | SMS_BP.simulate_cell.Simulate_cells | |
track_diffusion_updated | SMS_BP.simulate_cell.Simulate_cells | |
track_length_mean | SMS_BP.simulate_cell.Simulate_cells | |
transition_matrix_time_step | SMS_BP.simulate_cell.Simulate_cells | |