SMS_BP
Single Molecule Simulations -BP
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SMS_BP.simulate_cell.Simulate_cells Member List

This is the complete list of members for SMS_BP.simulate_cell.Simulate_cells, including all inherited members.

__init__(self, dict|str init_dict_json)SMS_BP.simulate_cell.Simulate_cells
_check_init_dict(self)SMS_BP.simulate_cell.Simulate_cellsprotected
_condensatesSMS_BP.simulate_cell.Simulate_cellsprotected
_convert_frame_to_time(self, int frame, int exposure_time, int interval_time, int oversample_motion_time)SMS_BP.simulate_cell.Simulate_cellsprotected
_convert_track_dict_msd(self, tracks)SMS_BP.simulate_cell.Simulate_cellsprotected
_convert_track_dict_points_per_frame(self, tracks, movie_frames)SMS_BP.simulate_cell.Simulate_cellsprotected
_create_map(self, np.ndarray initial_map, dict points_per_frame, str axial_function)SMS_BP.simulate_cell.Simulate_cellsprotected
_create_track_pop_dict(self, np.ndarray simulation_cube)SMS_BP.simulate_cell.Simulate_cellsprotected
_define_space(self, dims=(100, 100), movie_frames=500)SMS_BP.simulate_cell.Simulate_cellsprotected
_format_points_per_frame(self, points_per_frame)SMS_BP.simulate_cell.Simulate_cellsprotected
_point_per_time_selection(self, dict points_per_time)SMS_BP.simulate_cell.Simulate_cellsprotected
_read_json(self, str json_file)SMS_BP.simulate_cell.Simulate_cellsprotected
_update_units(self, unit, orig_type, update_type)SMS_BP.simulate_cell.Simulate_cellsprotected
axial_detection_range_pixSMS_BP.simulate_cell.Simulate_cells
condensate_diffusion_updatedSMS_BP.simulate_cell.Simulate_cells
condensatesSMS_BP.simulate_cell.Simulate_cells
condensates(self)SMS_BP.simulate_cell.Simulate_cells
condensates(self, dict condensates)SMS_BP.simulate_cell.Simulate_cells
diffusion_transition_matrixSMS_BP.simulate_cell.Simulate_cells
exposure_timeSMS_BP.simulate_cell.Simulate_cells
frame_countSMS_BP.simulate_cell.Simulate_cells
get_and_save_sim(self, str cd, str img_name, str subsegment_type, int sub_frame_num, **kwargs)SMS_BP.simulate_cell.Simulate_cells
get_cell(self)SMS_BP.simulate_cell.Simulate_cells
hurst_transition_matrixSMS_BP.simulate_cell.Simulate_cells
init_dictSMS_BP.simulate_cell.Simulate_cells
interval_timeSMS_BP.simulate_cell.Simulate_cells
oversample_motion_timeSMS_BP.simulate_cell.Simulate_cells
pixel_size_pixSMS_BP.simulate_cell.Simulate_cells
psf_sigma_pixSMS_BP.simulate_cell.Simulate_cells
total_timeSMS_BP.simulate_cell.Simulate_cells
track_diffusion_updatedSMS_BP.simulate_cell.Simulate_cells
track_length_meanSMS_BP.simulate_cell.Simulate_cells
transition_matrix_time_stepSMS_BP.simulate_cell.Simulate_cells