AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
pyproject.toml
chimera/__init__.py
chimera/__main__.py
chimera/chimera.py
chimera/config_manager.py
chimera/parcellation.py
chimera/processing.py
chimera/config/__init__.py
chimera/config/pipe_config.json
chimera/config/supraregions_dictionary.json
chimera/config/supraregions/Amygdala.tsv
chimera/config/supraregions/AuxiliaryLUTTable.tsv
chimera/config/supraregions/Brainstem.tsv
chimera/config/supraregions/Cerebellum.tsv
chimera/config/supraregions/Hippocampus.tsv
chimera/config/supraregions/Hypothalamus.tsv
chimera/config/supraregions/Subcortical.tsv
chimera/config/supraregions/Thalamus.tsv
chimera/config/supraregions/WhiteMatter.tsv
chimera/config/supraregions/__init__.py
chimera/data/__init__.py
chimera/data/annot_atlases/__init__.py
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Lausanne2018_scale-1_dseg.label.annot
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chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Lausanne2018_scale-3_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Lausanne2018_scale-4_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Lausanne2018_scale-5_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-1000_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-100_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-200_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-300_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-400_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-500_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-600_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-17n_scale-700_dseg.label.annot
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chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-7n_scale-100_dseg.label.annot
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chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-7n_scale-400_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-7n_scale-500_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-7n_scale-600_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-7n_scale-700_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-7n_scale-800_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-7n_scale-900_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-1000_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-100_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-200_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-300_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-400_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-500_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-600_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-700_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-800_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Schaefer2018_seg-kong17n_scale-900_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Yeo2011_seg-17n_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Yeo2011_seg-7n_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-brainnetome_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Lausanne2018_scale-1_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Lausanne2018_scale-2_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Lausanne2018_scale-3_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Lausanne2018_scale-4_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Lausanne2018_scale-5_dseg.label.annot
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chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-100_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-200_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-300_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-400_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-500_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-600_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-700_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-800_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-17n_scale-900_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-1000_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-100_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-200_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-300_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-400_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-500_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-600_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-700_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-800_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-7n_scale-900_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-1000_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-100_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-200_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-300_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-400_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-500_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-600_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-700_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-800_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Schaefer2018_seg-kong17n_scale-900_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Yeo2011_seg-17n_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Yeo2011_seg-7n_dseg.label.annot
chimera/data/annot_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-brainnetome_dseg.label.annot
chimera/data/gcs_atlases/__init__.py
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Broadmann1909_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Campbell1905_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-DKT2012_scale-40_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Flechsig1920_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-HCPMM1_seg-5p3_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-HCPMM1_seg-6p0_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-HCPMM1_seg-7p1_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Kleist1934_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Smith1907_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-Yeo2011_seg-7n_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-L_den-164k_atlas-vonEconomo1925_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Broadmann1909_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Campbell1905_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-DKT2012_scale-40_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Flechsig1920_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-HCPMM1_seg-5p3_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-HCPMM1_seg-6p0_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-HCPMM1_seg-7p1_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Kleist1934_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Smith1907_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-Yeo2011_seg-7n_dseg.label.gcs
chimera/data/gcs_atlases/tpl-fsaverage_hemi-R_den-164k_atlas-vonEconomo1925_dseg.label.gcs
chimera/data/vol_atlases/__init__.py
chimera/data/vol_atlases/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz
chimera/data/vol_atlases/tpl-MNI152NLin2009cAsym_res-01_atlas-MIAL67ThalamicNuclei_dseg.nii.gz
chimera/data/vol_atlases/tpl-MNI152NLin2009cAsym_res-01_atlas-MIAL67ThalamicNuclei_probseg.nii.gz
chimera/data/vol_atlases/tpl-MNI152NLin2009cAsym_res-01_atlas-SUIT_probseg.nii.gz
chimera_brainparcellation.egg-info/PKG-INFO
chimera_brainparcellation.egg-info/SOURCES.txt
chimera_brainparcellation.egg-info/dependency_links.txt
chimera_brainparcellation.egg-info/entry_points.txt
chimera_brainparcellation.egg-info/requires.txt
chimera_brainparcellation.egg-info/top_level.txt
docs/Figure1.png
docs/Figure2.png
docs/api.rst
docs/conf.py
docs/examples.rst
docs/index.rst
docs/installation.rst
docs/parcellations.rst
docs/quickstart.rst
docs/readme.rst
docs/_build/html/_images/Figure1.png
docs/_build/html/_images/Figure2.png
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
tests/__init__.py