DAY-EC activated.
DAY-EC activated.
=== status ===
{
  "command": "bin/day_run produce_ont_run_qc_and_demux_multiqc -p -j 5 -k --config run_context_file=config/runs.tsv samples_table=.test_data/data/samples.tsv units_table=.test_data/data/units.tsv",
  "completed_at": "2026-05-30T02:50:20Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis",
  "session_name": "ccv20260529r10_ont_run_qc",
  "started_at": "2026-05-30T02:48:23Z"
}
=== repo ===
/fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis
=== latest snakemake logs ===
1780109419.0000000000 .snakemake/log/2026-05-30T024845.070351.snakemake.log
1780109421.0000000000 .snakemake/log/2026-05-30T025020.690510.snakemake.log
=== latest log path: .snakemake/log/2026-05-30T025020.690510.snakemake.log ===
1:WorkflowError in file /fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis/workflow/rules/common.smk, line 426:
=== latest log tail ===
WorkflowError in file /fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis/workflow/rules/common.smk, line 426:
The units table was not found at /fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis/config/units.tsv. Create config/units.tsv or set --config units_table=/path/to/units.tsv.
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis/workflow/Snakefile", line 66, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis/workflow/rules/global_common.smk", line 151, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis/workflow/rules/common.smk", line 1089, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_ont_run_qc/daylily-omics-analysis/workflow/rules/common.smk", line 426, in _load_units_table
=== rule logs with errors ===
results/runs/20260513_ONT_HG003/run_qc/ont/logs/pycoqc.log:29:Traceback (most recent call last):
results/runs/20260513_ONT_HG003/run_qc/ont/logs/pycoqc.log:68:ValueError: sort array is read-only
results/runs/20260513_ONT_HG003/run_qc/ont/logs/demux_fastq_qc.log:5:error: Found argument '/fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_fail/barcode01/PBM13745_fail_barcode01_5a9ea63e_ee86bd52_0.fastq.gz' which wasn't expected, or isn't valid in this context
