DAY-EC activated.
DAY-EC activated.
status:
{
  "command": "bin/day_run produce_bclconvert_fastqs_and_metrics -p -j 20 -k --config run_context_file=config/runs.tsv bootstrap_bclconvert=true",
  "completed_at": null,
  "exit_code": null,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r25_illumina_bclconvert/daylily-omics-analysis",
  "session_name": "ccv20260529r25_illumina_bclconvert",
  "started_at": "2026-05-30T06:24:12Z"
}

active_bcl_config:
109-    partition: "i192,i192mem"
110-
111:bclconvert:
112-    run_dir: ""
113-    sample_sheet: "SampleSheet.csv"
114-    output_root: "results/bclconvert"
115-    run_id: ""
116-    libprep: "PCR-FREE"
117-    seq_vendor: "ILMN"
118-    seq_platform_override: ""
119-    force: "true"
120-    keep_undetermined_fastqs: true
121-    sampleproject_subdirectories: false
122-    strict_mode: false
123-    first_tile_only: false
124-    extra_args: ""
125-    threads: 192
126-    mem_mb: 180000
127-    partition: "i192mem"
128-    tmpdir: "/fsx/analysis_results/ubuntu/ccv20260529r25_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch"
129-    staging_mode: "output_dev_shm"
130-    scratch_root: "/fsx/analysis_results/ubuntu/ccv20260529r25_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch"
131-    scratch_size_multiplier: 4
132-    retain_scratch: false
133-    mounted_stage_jobs: 64
134-    parallel_tiles: 8
135-    conversion_threads: 8
136-    compression_threads: 12
137-    decompression_threads: 4
138-    fastq_gzip_compression_level: 1
139-    shared_thread_odirect_output: false
140-
141-bcl2fq_by_lane:
142-    threads: 16
143-    partition: "i192,i192mem"

config_tables:
-rw-rw-r-- 1 ubuntu ubuntu  486 May 30 06:24 /fsx/analysis_results/ubuntu/ccv20260529r25_illumina_bclconvert/daylily-omics-analysis/config/runs.tsv
-rw-rw-r-- 1 ubuntu ubuntu 3213 May 30 06:24 /fsx/analysis_results/ubuntu/ccv20260529r25_illumina_bclconvert/daylily-omics-analysis/config/samples.tsv
config/units.tsv missing

run_log_tail:

scratch_tree:

slurm:
             JOBID PARTITION         NAME     USER ST       TIME  NODES NODELIST(REASON)
              2658   i192mem run_bclconve   ubuntu CF       0:39      1 i192mem-dy-all-1
