DAY-EC activated.
DAY-EC activated.
host:
i192mem-dy-all-1
Sat May 30 06:55:19 UTC 2026

job_processes:
    PID    PPID STAT     ELAPSED %CPU %MEM COMMAND
  34407   34406 Sl         21:38  1.4  0.0 python
  35306   34407 S          21:32  0.0  0.0 bash
  37926   35306 S          21:14  0.0  0.0 xargs
  37927   37926 S          21:14  0.0  0.0 bash
  37928   37926 S          21:14  0.0  0.0 bash
  37929   37926 S          21:14  0.0  0.0 bash
  37930   37926 S          21:14  0.0  0.0 bash
  37931   37926 S          21:14  0.0  0.0 bash
  37934   37926 S          21:14  0.0  0.0 bash
  37935   37926 S          21:14  0.0  0.0 bash
  37939   37926 S          21:14  0.0  0.0 bash
  37941   37926 S          21:14  0.0  0.0 bash
  37944   37926 S          21:14  0.0  0.0 bash
  37948   37926 S          21:14  0.0  0.0 bash
  37950   37926 S          21:14  0.0  0.0 bash
  37954   37926 S          21:14  0.0  0.0 bash
  37957   37926 S          21:14  0.0  0.0 bash
  37960   37926 S          21:14  0.0  0.0 bash
  37964   37926 S          21:14  0.0  0.0 bash
  37969   37926 S          21:14  0.0  0.0 bash
  37973   37926 S          21:14  0.0  0.0 bash
  37977   37926 S          21:14  0.0  0.0 bash
  37982   37926 S          21:14  0.0  0.0 bash
  37988   37926 S          21:14  0.0  0.0 bash
  37991   37926 S          21:14  0.0  0.0 bash
  37995   37926 S          21:14  0.0  0.0 bash
  37999   37926 S          21:14  0.0  0.0 bash
  38002   37926 S          21:14  0.0  0.0 bash
  38007   37926 S          21:14  0.0  0.0 bash
  38013   37926 S          21:14  0.0  0.0 bash
  38016   37926 S          21:14  0.0  0.0 bash
  38018   37926 S          21:14  0.0  0.0 bash
  38023   37926 S          21:14  0.0  0.0 bash
  38027   37926 S          21:14  0.0  0.0 bash
  38030   37926 S          21:14  0.0  0.0 bash
  38034   37926 S          21:14  0.0  0.0 bash
  38038   37926 S          21:14  0.0  0.0 bash
  38041   37926 S          21:14  0.0  0.0 bash
  38044   37926 S          21:14  0.0  0.0 bash
  38050   37926 S          21:14  0.0  0.0 bash
  38055   37926 S          21:14  0.0  0.0 bash
  38058   37926 S          21:14  0.0  0.0 bash
  38061   37926 S          21:14  0.0  0.0 bash
  38064   37926 S          21:14  0.0  0.0 bash
  38070   37926 S          21:14  0.0  0.0 bash
  38074   37926 S          21:14  0.0  0.0 bash
  38079   37926 S          21:14  0.0  0.0 bash
  38083   37926 S          21:14  0.0  0.0 bash
  38085   37926 S          21:14  0.0  0.0 bash
  38094   37926 S          21:14  0.0  0.0 bash
  38097   37926 S          21:14  0.0  0.0 bash
  38100   37926 S          21:14  0.0  0.0 bash
  38103   37926 S          21:14  0.0  0.0 bash
  38108   37926 S          21:14  0.0  0.0 bash
  38112   37926 S          21:14  0.0  0.0 bash
  38115   37926 S          21:14  0.0  0.0 bash
  38120   37926 S          21:14  0.0  0.0 bash
  38122   37926 S          21:14  0.0  0.0 bash
  38126   37926 S          21:14  0.0  0.0 bash
  38131   37926 S          21:14  0.0  0.0 bash
  38133   37926 S          21:14  0.0  0.0 bash
  38137   37926 S          21:14  0.0  0.0 bash
  38140   37926 S          21:14  0.0  0.0 bash
  38141   37926 S          21:14  0.0  0.0 bash
  38147   37926 S          21:14  0.0  0.0 bash
  38150   37926 S          21:14  0.0  0.0 bash
  38152   37926 S          21:14  0.0  0.0 bash
  53787   37999 I          01:35  0.9  0.0 cp
  53835   38013 I          01:32  0.9  0.0 cp
  53847   38140 I          01:30  1.0  0.0 cp
  53956   37950 I          01:08  1.2  0.0 cp
  53966   38112 I          01:07  1.2  0.0 cp
  54003   37977 I          00:58  1.6  0.0 cp
  54009   37939 I          00:58  0.8  0.0 cp
  54012   38016 I          00:58  1.4  0.0 cp
  54015   38120 I          00:58  1.2  0.0 cp
  54024   37929 I          00:57  1.5  0.0 cp
  54030   38055 I          00:57  1.4  0.0 cp
  54042   37930 I          00:56  1.4  0.0 cp
  54045   38150 I          00:56  1.3  0.0 cp
  54051   38085 I          00:56  1.2  0.0 cp
  54060   38050 I          00:55  1.4  0.0 cp
  54063   38103 I          00:55  1.2  0.0 cp
  54066   38108 I          00:55  1.6  0.0 cp
  54069   38030 I          00:54  1.4  0.0 cp
  54072   38131 I          00:47  1.6  0.0 cp
  54075   37928 I          00:45  1.5  0.0 cp
  54078   38058 I          00:45  1.0  0.0 cp
  54081   38018 I          00:44  1.7  0.0 cp
  54088   38044 I          00:44  1.7  0.0 cp
  54117   38034 I          00:37  1.2  0.0 cp
  54126   38141 I          00:36  1.6  0.0 cp
  54129   37969 I          00:36  1.3  0.0 cp
  54132   38061 I          00:36  1.1  0.0 cp
  54137   38064 I          00:36  0.8  0.0 cp
  54143   37931 I          00:35  0.3  0.0 cp
  54155   37964 I          00:34  0.1  0.0 cp
  54158   37982 I          00:34  1.4  0.0 cp
  54161   38115 I          00:33  1.4  0.0 cp
  54167   37948 I          00:33  1.1  0.0 cp
  54170   37960 I          00:33  1.3  0.0 cp
  54173   37995 I          00:32  1.2  0.0 cp
  54176   38079 I          00:32  1.1  0.0 cp
  54180   38041 I          00:32  1.2  0.0 cp
  54182   37935 D          00:32  0.1  0.0 cp
  54194   38100 I          00:31  0.1  0.0 cp
  54212   37991 D          00:29  0.2  0.0 cp
  54218   38122 I          00:29  1.3  0.0 cp
  54224   38097 D          00:29  0.2  0.0 cp
  54233   38027 I          00:28  0.1  0.0 cp
  54248   38007 I          00:28  1.4  0.0 cp
  54251   37941 I          00:27  1.6  0.0 cp
  54263   38070 I          00:27  0.1  0.0 cp
  54266   37934 I          00:27  1.1  0.0 cp
  54285   38038 I          00:24  1.5  0.0 cp
  54288   37927 D          00:24  0.1  0.0 cp
  54291   37973 I          00:23  1.5  0.0 cp
  54353   38083 I          00:16  1.9  0.0 cp
  54356   38147 I          00:16  1.8  0.0 cp
  54363   38074 R          00:13  1.6  0.0 cp
  54366   37988 R          00:13  2.0  0.0 cp
  54369   37954 D          00:12  0.1  0.0 cp
  54375   38023 I          00:11  1.7  0.0 cp
  54378   38137 I          00:09  1.6  0.0 cp
  54381   38152 I          00:09  2.0  0.0 cp
  54384   37957 I          00:09  0.1  0.0 cp
  54387   38126 R          00:09  1.5  0.0 cp
  54445   38133 I          00:06  0.0  0.0 cp
  54478   38094 I          00:04  0.0  0.0 cp
  54481   37944 I          00:04  0.0  0.0 cp
  54533   38002 I          00:01  0.0  0.0 cp

scratch_summary:
569G	/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
2605
292
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C11.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C120.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C181.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C201.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C209.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C210.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C218.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C253.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C260.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C264.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C288.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C298.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C301.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C6.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C60.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C77.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C78.1/L007_2.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C9.1/L007_1.cbcl
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/s_7_2476.filter
1780124122.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/s_7_2497.filter

rsync_logs:
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
2576 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul
0 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul

run_log_tail:
run_bclconvert started: 2026-05-30T06:33:47+00:00
host: i192mem-dy-all-1
threads: 192
resources_mem_mb: 180000
TMPDIR: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
staging_mode: mounted_dev_shm
scratch_root: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
bcl_input_directory: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
source_s3_uri: s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/LH01106/2026/20260514_LH01106_0009_B23TVLGLT4/
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
192
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
/usr/bin/singularity
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
scratch_dir: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306
scratch_input_basis: mounted_metadata_plus_lane_root
scratch_root_file_bytes: 4536017
scratch_intensities_file_bytes: 52032652
scratch_lane_root_disk_bytes: 92860928
scratch_input_disk_bytes: 149429597
scratch_input_apparent_bytes: 149429597
scratch_required_bytes: 1671460212
scratch_available_bytes: 9361524129792
Staging mounted BCL run directory to scratch: 2026-05-30T06:33:54+00:00
mounted_stage_lanes: L001 L002 L003 L004 L005 L006 L007 L008
mounted_stage_jobs: 64
mounted_stage_cycle_dirs: 2576
mounted_stage_regular_files: 11424
Copying mounted BCL files with sharded cp: 2026-05-30T06:34:06+00:00

slurm:
             JOBID PARTITION         NAME     USER ST       TIME  NODES NODELIST(REASON)
              2660   i192mem run_bclconve   ubuntu  R      21:41      1 i192mem-dy-all-1
