Metadata-Version: 2.4
Name: treeknit
Version: 1.0.0
Summary: Inference of reassortment from segment trees
License-Expression: MIT
License-File: LICENSE
Project-URL: Repository, https://github.com/neherlab/treeknit
Project-URL: Releases, https://github.com/neherlab/treeknit/releases
Description-Content-Type: text/markdown

# TreeKnit

TreeKnit infers reassortment from segment trees:

- maximally compatible clades (MCCs) for every pair of trees
- trees with polytomies resolved using the other trees
- for two trees, an ancestral reassortment graph (ARG)

The [README](https://github.com/neherlab/treeknit#readme) explains its use, and the [web app](https://neherlab.github.io/treeknit/) runs the same analyses in the browser.

The x86_64 builds need a Haswell (2013) or newer CPU with AVX2, and the Linux ARM64 builds an ARMv8.2-A CPU.

This package installs the `treeknit` command-line program, the prebuilt binary of the [GitHub release](https://github.com/neherlab/treeknit/releases/tag/1.0.0).

Wheels exist for Linux on x86_64 and ARM64 (glibc 2.17 or newer, or musl), macOS 10.12 or newer on Intel and 11.0 or newer on Apple Silicon, and Windows on x86_64.
