LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
taxopipe/__init__.py
taxopipe/cli.py
taxopipe.egg-info/PKG-INFO
taxopipe.egg-info/SOURCES.txt
taxopipe.egg-info/dependency_links.txt
taxopipe.egg-info/entry_points.txt
taxopipe.egg-info/requires.txt
taxopipe.egg-info/top_level.txt
taxopipe/commands/__init__.py
taxopipe/commands/download.py
taxopipe/commands/download_abundance.py
taxopipe/commands/get_abundance.py
taxopipe/commands/get_abundance_fixed.py
taxopipe/commands/hpc.py
taxopipe/commands/hpc_impl.py
taxopipe/commands/status.py
taxopipe/templates/job_script.sh
taxopipe/templates/simple_job_script.sh
taxopipe/templates/simple_job_script_fixed.sh
taxopipe/utils/__init__.py
taxopipe/utils/config.py
taxopipe/utils/ssh.py
taxopipe/utils/workflow.py
taxopipe/utils/workflow_updated.py