itasc.contact_analysis.quantifiers

Quantifier plugins.

Dropping a *.py module here whose class subclasses itasc.contact_analysis.quantifier.Quantifier (with a non-empty quantity_id) registers a new per-position quantity. available_quantifiers imports every module here so they self-register.

Submodules

cell_density	Cell-density quantifier — per-frame cell counts per field-of-view area.
cell_dynamics	Cell-dynamics quantifier — the registry adapter over the dynamics core.
cell_shape	Cell-shape quantifier — the registry adapter over the shape core.
contacts	Cell-cell contacts quantifier — the registry adapter over the contacts code.
neighbor_count	Neighbor-count quantifier — per-cell adjacency degree from the contact graph.
nucleus_dynamics	Nucleus-dynamics quantifier — the registry adapter over the dynamics core.
nucleus_shape	Nucleus-shape quantifier — the registry adapter over the shape core.
shape_relational	Relational shape quantifier — nucleus-vs-cell paired morphology.
signed_contact_length	Signed-contact-length quantifier — signed T1 junction lengths for the potential.