itasc.tracking_ultrack.export

Export selected NodeDB nodes to a (T, Z, Y, X) tracked labelmap.

Functions

export_tracked_labels(working_dir, cfg, ...)

Write tracked_labels.tif and return the (T, [Z,] Y, X) array.

itasc.tracking_ultrack.export.export_tracked_labels(working_dir, cfg, output_path, *, corrections=None, validated_tracks=None, tracked_labels=None, preserve_validated_ids=None)

Write tracked_labels.tif and return the (T, [Z,] Y, X) array.

Return type:

ndarray

Parameters:

• working_dir (str | Path)

• cfg (TrackingConfig)

• output_path (str | Path)

• corrections (list[Correction] | None)

• validated_tracks (dict[int, set[int]] | None)

• tracked_labels (ndarray | None)

• preserve_validated_ids (bool | None)