itasc.tracking_ultrack

Ultrack-based ILP tracker for ITASC candidate databases.

Submodules

atoms	Atom extraction: residual-conditioned foreground split by contour ridges.
config	Pydantic configuration model for the Ultrack-based tracking stage.
corrections	Per-frame correction primitives for Ultrack solves and exports.
db_build	Shared Ultrack database construction pipeline.
db_query	Read-only Ultrack database helpers for napari preview tooling.
export	Export selected NodeDB nodes to a (T, Z, Y, X) tracked labelmap.
extend
ingest	Ultrack configuration helpers for ITASC tracking.
linking	Linking step: wire NodeDB into LinkDB.
multi_threshold	Source-node provenance queries for Ultrack databases.
reseed	Re-solve with validated tracks using annotated Ultrack seed nodes.
retracker	Constrained greedy retracker using the shared linker similarity score.
scoring	Shared similarity scoring used by both the linker and the greedy retracker.
seed_prior	Resolve-time node probability scoring from image quality and validated seeds.
solve	Thin wrapper around ultrack.core.solve.processing.solve.
swap_candidate
track_quality	Per-track quality scoring derived from the solved Ultrack database.
validation_nodes	Inject validated tracked labels as annotated Ultrack nodes.
validation_state	Persistent validation metadata for the nucleus workflow.