API Reference

This reference is generated from the source docstrings: browse from each package’s overview down to individual functions and classes.

ITASC’s supported programmatic entry points are the workflow subpackages below. import itasc itself stays intentionally light (only __version__) and avoids importing napari, Cellpose, or Ultrack. The napari UI layer (itasc.napari) is documented in the user manual, starting with the full app guide, rather than here.

itasc.core
itasc.cellpose	Cellpose stage + standalone segment/track tool.
itasc.segmentation	Segmentation package — shared utilities and submodule re-exports.
itasc.tracking_ultrack	Ultrack-based ILP tracker for ITASC candidate databases.
itasc.correction
itasc.contact_analysis	Contact Analysis: pool per-position sources into aggregate tidy tables.