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ITASC
ITASC

User Manual

  • Install
  • itasc[all]
  • itasc-cellpose
  • itasc-tracking
  • itasc-aggregate
  • itasc-core

Reference

  • API Reference
    • itasc.core
      • itasc.core.cancellation
      • itasc.core.commit
      • itasc.core.imageops
      • itasc.core.label_store
      • itasc.core.lineage
      • itasc.core.logging
      • itasc.core.paths
      • itasc.core.tiff
    • itasc.cellpose
      • itasc.cellpose.cellpose_runner
      • itasc.cellpose.divergence_maps
      • itasc.cellpose.flow_following
      • itasc.cellpose.joint
      • itasc.cellpose.native_masks
      • itasc.cellpose.retrack
      • itasc.cellpose.shape
      • itasc.cellpose.track_laptrack
    • itasc.segmentation
      • itasc.segmentation.cell_divergence_segmentation
      • itasc.segmentation.cell_label_icm
      • itasc.segmentation.contour_filtering
      • itasc.segmentation.lineage
      • itasc.segmentation.nucleus_segmentation
    • itasc.tracking_ultrack
      • itasc.tracking_ultrack.atoms
      • itasc.tracking_ultrack.config
      • itasc.tracking_ultrack.corrections
      • itasc.tracking_ultrack.db_build
      • itasc.tracking_ultrack.db_query
      • itasc.tracking_ultrack.export
      • itasc.tracking_ultrack.extend
      • itasc.tracking_ultrack.ingest
      • itasc.tracking_ultrack.linking
      • itasc.tracking_ultrack.multi_threshold
      • itasc.tracking_ultrack.reseed
      • itasc.tracking_ultrack.retracker
      • itasc.tracking_ultrack.scoring
      • itasc.tracking_ultrack.seed_prior
      • itasc.tracking_ultrack.solve
      • itasc.tracking_ultrack.swap_candidate
      • itasc.tracking_ultrack.track_quality
      • itasc.tracking_ultrack.validation_nodes
      • itasc.tracking_ultrack.validation_state
    • itasc.correction
      • itasc.correction.labels
    • itasc.contact_analysis
      • itasc.contact_analysis.catalog
      • itasc.contact_analysis.config
      • itasc.contact_analysis.contacts
        • itasc.contact_analysis.contacts.batch
        • itasc.contact_analysis.contacts.build
        • itasc.contact_analysis.contacts.contact_labels
        • itasc.contact_analysis.contacts.neighborhood
        • itasc.contact_analysis.contacts.reader
        • itasc.contact_analysis.contacts.signed_contact_length
      • itasc.contact_analysis.curation
      • itasc.contact_analysis.dynamics
        • itasc.contact_analysis.dynamics.collective
        • itasc.contact_analysis.dynamics.kinematics
        • itasc.contact_analysis.dynamics.msd
        • itasc.contact_analysis.dynamics.store
        • itasc.contact_analysis.dynamics.trajectories
      • itasc.contact_analysis.frame_interval
      • itasc.contact_analysis.pipeline
      • itasc.contact_analysis.pixel_size
      • itasc.contact_analysis.quantifier
      • itasc.contact_analysis.quantifiers
        • itasc.contact_analysis.quantifiers.cell_density
        • itasc.contact_analysis.quantifiers.cell_dynamics
        • itasc.contact_analysis.quantifiers.cell_shape
        • itasc.contact_analysis.quantifiers.contacts
        • itasc.contact_analysis.quantifiers.neighbor_count
        • itasc.contact_analysis.quantifiers.nucleus_dynamics
        • itasc.contact_analysis.quantifiers.nucleus_shape
        • itasc.contact_analysis.quantifiers.shape_relational
        • itasc.contact_analysis.quantifiers.signed_contact_length
      • itasc.contact_analysis.records
      • itasc.contact_analysis.shape
        • itasc.contact_analysis.shape.core
        • itasc.contact_analysis.shape.relational
      • itasc.contact_analysis.shape_tables

Development

  • Architecture overview
  • Maintaining the docs
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