LICENSE
README.md
pyproject.toml
src/aminx/__init__.py
src/aminx/cli.py
src/aminx/py.typed
src/aminx/registry.py
src/aminx/runtime.py
src/aminx.egg-info/PKG-INFO
src/aminx.egg-info/SOURCES.txt
src/aminx.egg-info/dependency_links.txt
src/aminx.egg-info/entry_points.txt
src/aminx.egg-info/requires.txt
src/aminx.egg-info/top_level.txt
src/aminx/host/_base_driver.py
src/aminx/host/_sampling_averaged.py
src/aminx/host/_sampling_grid_lineage.py
src/aminx/host/_sampling_helper.py
src/aminx/host/averaging.py
src/aminx/host/bundle_builder.py
src/aminx/host/campaign.py
src/aminx/host/kernel_dispatch.py
src/aminx/host/logit_aggregation.py
src/aminx/host/output_sinks.py
src/aminx/host/plan.py
src/aminx/host/prep.py
src/aminx/host/runner.py
src/aminx/host/sampling_driver.py
src/aminx/host/streaming.py
src/aminx/host/streaming_host.py
src/aminx/inference/bundle_builder.py
src/aminx/inference/driver.py
src/aminx/inference/encode.py
src/aminx/inference/logits.py
src/aminx/inference/optimize_ste.py
src/aminx/inference/sample_autoregressive.py
src/aminx/inference/score_conditional.py
src/aminx/inference/score_unconditional.py
src/aminx/inference/decode/__init__.py
src/aminx/inference/decode/_base.py
src/aminx/inference/decode/_kernel.py
src/aminx/inference/decode/autoregressive.py
src/aminx/inference/decode/conditional.py
src/aminx/inference/decode/factory.py
src/aminx/inference/decode/mode.py
src/aminx/inference/decode/protocols.py
src/aminx/inference/decode/ste.py
src/aminx/inference/decode/unconditional.py
src/aminx/io/__init__.py
src/aminx/io/designs.py
src/aminx/io/weights.py
src/aminx/io/parsing/__init__.py
src/aminx/io/parsing/dispatch.py
src/aminx/model/__init__.py
src/aminx/model/capabilities.py
src/aminx/model/decoder.py
src/aminx/model/diffusion_mpnn.py
src/aminx/model/dropout.py
src/aminx/model/encoder.py
src/aminx/model/features.py
src/aminx/model/ligand_features.py
src/aminx/model/ligand_mpnn.py
src/aminx/model/ligand_tiling.py
src/aminx/model/mpnn.py
src/aminx/model/mpnn_core.py
src/aminx/model/packer.py
src/aminx/model/versions.py
src/aminx/model_params/__init__.py
src/aminx/model_params/ligandmpnn_v_32_005_25.eqx.zst
src/aminx/model_params/ligandmpnn_v_32_010_25.eqx.zst
src/aminx/model_params/ligandmpnn_v_32_020_25.eqx.zst
src/aminx/model_params/ligandmpnn_v_32_030_25.eqx.zst
src/aminx/model_params/proteinmpnn_v_48_002.eqx.zst
src/aminx/model_params/proteinmpnn_v_48_010.eqx.zst
src/aminx/model_params/proteinmpnn_v_48_020.eqx.zst
src/aminx/model_params/proteinmpnn_v_48_030.eqx.zst
src/aminx/model_params/solublempnn_v_48_002.eqx.zst
src/aminx/model_params/solublempnn_v_48_010.eqx.zst
src/aminx/model_params/solublempnn_v_48_020.eqx.zst
src/aminx/model_params/solublempnn_v_48_030.eqx.zst
src/aminx/parity/__init__.py
src/aminx/parity/assets.py
src/aminx/parity/evidence.py
src/aminx/parity/matrix.py
src/aminx/profiling/__init__.py
src/aminx/profiling/hlo_tools.py
src/aminx/profiling/sampler_profile.py
src/aminx/run/__init__.py
src/aminx/run/decode_registry.py
src/aminx/run/resources.py
src/aminx/run/run_spec_portable_json.py
src/aminx/run/spec.py
src/aminx/run/spec_json.py
src/aminx/run/specs.py
src/aminx/sampling/__init__.py
src/aminx/sampling/conditional_logits.py
src/aminx/sampling/sample.py
src/aminx/scoring/__init__.py
src/aminx/scoring/score.py
src/aminx/tiling/__init__.py
src/aminx/tiling/axes.py
src/aminx/tiling/bucketing.py
src/aminx/tiling/buckets.py
src/aminx/tiling/carry.py
src/aminx/tiling/carry_shape.py
src/aminx/tiling/dedup.py
src/aminx/tiling/dispatch.py
src/aminx/tiling/errors.py
src/aminx/tiling/iterator.py
src/aminx/tiling/pad.py
src/aminx/tiling/planner.py
src/aminx/tiling/strategy.py
src/aminx/training/__init__.py
src/aminx/training/checkpoint.py
src/aminx/training/diffusion.py
src/aminx/training/losses.py
src/aminx/training/metrics.py
src/aminx/training/specs.py
src/aminx/training/test_diffusion_loop.py
src/aminx/training/train_diffusion.py
src/aminx/training/trainer.py
src/aminx/training/dataloading/__init__.py
src/aminx/training/dataloading/preprocess.py
src/aminx/types/__init__.py
src/aminx/types/arrays.py
src/aminx/types/boundaries.py
src/aminx/types/bundles.py
src/aminx/types/configs.py
src/aminx/types/encodings.py
src/aminx/types/protocols.py
src/aminx/types/stages.py
src/aminx/utils/__init__.py
src/aminx/utils/_vendored_callbacks.py
src/aminx/utils/aa_convert.py
src/aminx/utils/align.py
src/aminx/utils/apc.py
src/aminx/utils/atom_ordering.py
src/aminx/utils/atomic_write.py
src/aminx/utils/autoregression.py
src/aminx/utils/catjac.py
src/aminx/utils/concatenate.py
src/aminx/utils/coordinates.py
src/aminx/utils/data_structures.py
src/aminx/utils/decoding_order.py
src/aminx/utils/entropy.py
src/aminx/utils/gelu.py
src/aminx/utils/graph.py
src/aminx/utils/normalize.py
src/aminx/utils/radial_basis.py
src/aminx/utils/reverse_jac.py
src/aminx/utils/safe_map.py
src/aminx/utils/safe_scan.py
src/aminx/utils/ste.py
src/aminx/utils/structure_metrics.py
src/aminx/utils/testing.py
src/aminx/utils/typing.py
src/aminx/utils/wave_parallel.py
tests/test_import_isolation.py