.gitignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE.md
README.md
environment.yml
pyproject.toml
requirements.txt
.github/workflows/python-package.yml
barcode_validator/__init__.py
barcode_validator/__main__.py
barcode_validator/_version.py
barcode_validator/cli.py
barcode_validator/constants.py
barcode_validator/criteria.py
barcode_validator/dna_analysis_result.py
barcode_validator/orchestrator.py
barcode_validator.egg-info/PKG-INFO
barcode_validator.egg-info/SOURCES.txt
barcode_validator.egg-info/dependency_links.txt
barcode_validator.egg-info/requires.txt
barcode_validator.egg-info/top_level.txt
barcode_validator/config/__init__.py
barcode_validator/config/schema.yaml
barcode_validator/config/schema_config.py
barcode_validator/hmm_files/COI-5P.hmm
barcode_validator/hmm_files/__init__.py
barcode_validator/idservices/__init__.py
barcode_validator/idservices/blast.py
barcode_validator/idservices/bold.py
barcode_validator/idservices/bolddistilled.py
barcode_validator/idservices/factory.py
barcode_validator/idservices/galaxy_blast.py
barcode_validator/idservices/idservice.py
barcode_validator/resolvers/__init__.py
barcode_validator/resolvers/bold.py
barcode_validator/resolvers/bolddistilled.py
barcode_validator/resolvers/factory.py
barcode_validator/resolvers/ncbi.py
barcode_validator/resolvers/nsr.py
barcode_validator/resolvers/taxonomy.py
barcode_validator/validators/__init__.py
barcode_validator/validators/factory.py
barcode_validator/validators/non_coding.py
barcode_validator/validators/protein_coding.py
barcode_validator/validators/structural.py
barcode_validator/validators/taxonomic.py
barcode_validator/validators/validator.py
tests/arise/test_arise.py
tests/arise/data/NLMIN.fasta
tests/arise/data/NLMIN.xlsx
tests/arise/data/NLTIN.fasta
tests/arise/data/NLTIN.xlsx
tests/arise/data/NLVRT.fas
tests/arise/data/NLVRT.xlsx
tests/arise/data/NLVRT_BOLD.fas
tests/arise/data/README.md
tests/arise/data/arise_out.fasta
tests/arise/data/arise_out.tsv
tests/bge/README.md
tests/bge/test_bge.py
tests/bge/data/WK-3860_BSNHM190-con_seqs.fasta
tests/bge/data/WK-3860_BSNHM190-metrics.csv
tests/bge/data/YB-4226_snpseq01200-con_seqs.fasta
tests/bge/data/YB-4226_snpseq01200-metrics.csv
tests/bge/data/YB-4226_snpseq01200-structval.fasta
tests/bge/data/YB-4226_snpseq01200-structval.tsv
tests/bge/data/YB-4226_snpseq01200-taxonval.fasta
tests/bge/data/YB-4226_snpseq01200-taxonval.tsv
tests/bge/data/bold_bge_container_plus-updated.xlsx
tests/bge/data/full.log
tests/bge/data/full_out.fasta
tests/bge/data/full_out.tsv
tests/bge/data/structval_out.fasta
tests/bge/data/structval_out.tsv
tests/bge/data/taxonval_out.fasta
tests/bge/data/taxonval_out.tsv
tests/bold/test_bold.py
tests/bold/data/NLVRT.fas
tests/bold/data/NLVRT.xlsx
tests/bold/data/arise_out.fasta
tests/bold/data/arise_out.tsv
tests/galaxy/test_galaxy.py
tests/galaxy/data/NLVRT.fas
tests/galaxy/data/NLVRT.xlsx
tests/galaxy/data/arise_out.fasta
tests/galaxy/data/arise_out.tsv