LICENSE
README.md
pyproject.toml
nuscope_tomo/__init__.py
nuscope_tomo/advisor.py
nuscope_tomo/cli.py
nuscope_tomo/cohort.py
nuscope_tomo/live.py
nuscope_tomo/mcp.py
nuscope_tomo.egg-info/PKG-INFO
nuscope_tomo.egg-info/SOURCES.txt
nuscope_tomo.egg-info/dependency_links.txt
nuscope_tomo.egg-info/entry_points.txt
nuscope_tomo.egg-info/requires.txt
nuscope_tomo.egg-info/top_level.txt
nuscope_tomo/ai/__init__.py
nuscope_tomo/ai/n2v.py
nuscope_tomo/ai/segment.py
nuscope_tomo/ai/unet.py
nuscope_tomo/analyze/__init__.py
nuscope_tomo/analyze/confidence.py
nuscope_tomo/analyze/materials.py
nuscope_tomo/analyze/objects.py
nuscope_tomo/analyze/phase.py
nuscope_tomo/analyze/quality.py
nuscope_tomo/autonomy/__init__.py
nuscope_tomo/autonomy/agent.py
nuscope_tomo/autonomy/instrument.py
nuscope_tomo/autonomy/twin.py
nuscope_tomo/chem/__init__.py
nuscope_tomo/chem/eds.py
nuscope_tomo/chem/simulate.py
nuscope_tomo/core/__init__.py
nuscope_tomo/core/recipe.py
nuscope_tomo/core/registry.py
nuscope_tomo/core/volume.py
nuscope_tomo/io/__init__.py
nuscope_tomo/io/stack.py
nuscope_tomo/preprocess/__init__.py
nuscope_tomo/preprocess/_util.py
nuscope_tomo/preprocess/align.py
nuscope_tomo/preprocess/correct.py
nuscope_tomo/preprocess/denoise.py
nuscope_tomo/preprocess/geometry.py
nuscope_tomo/segment/__init__.py
nuscope_tomo/segment/classifier.py
nuscope_tomo/segment/objects.py
nuscope_tomo/segment/threshold.py
nuscope_tomo/sparse/__init__.py
nuscope_tomo/sparse/active.py
nuscope_tomo/sparse/dkl.py
nuscope_tomo/sparse/pansharpen.py
nuscope_tomo/studio/__init__.py
nuscope_tomo/studio/server.py
nuscope_tomo/studio/static/app.js
nuscope_tomo/studio/static/charts.js
nuscope_tomo/studio/static/gl.js
nuscope_tomo/studio/static/index.html
nuscope_tomo/studio/static/pages.js
nuscope_tomo/studio/static/shell.js
nuscope_tomo/studio/static/style.css
nuscope_tomo/viz/__init__.py
nuscope_tomo/viz/figures.py
nuscope_tomo/viz/render.py
tests/test_mcp_plugin.py
tests/test_pipeline.py