__pycache__/
*.py[cod]
*.egg-info/
.venv/
dist/
build/
.pytest_cache/
.ruff_cache/
.coverage
htmlcov/
.DS_Store
tests/r_out/
benchmarks/**/py_out/
# Phase 2 benchmark harness outputs regenerate from scripts/phase2_benchmark/;
# the source of truth is the harness, not the TSV dumps or per-patient r_out.
benchmarks/phase2/
examples/*.executed.ipynb.bak
.ipynb_checkpoints/
/tmp_*
quickstart_30s_heatmap.png

# Internal planning / review / diagnostic history — kept locally for the
# maintainer's reference but not part of the public release.
docs/superpowers/
CODEX_HANDOFF.md
scripts/track_a1/
scripts/triage_i3/
scripts/triage_phase1/
scripts/codex_review_sanitize.py
scripts/codex_review.sh
tests/unit/test_codex_sanitize.py

# Raw codex session dumps — archive relevant ones as docs/superpowers/reviews/*.raw.md
# with a banner; keep stray .log files local-only to avoid leaking injection payloads.
*.log
