.gitignore
LICENCE
MANIFEST.in
README.md
pyproject.toml
.github/workflows/docs_build_and_deploy.yml
.github/workflows/test_and_deploy.yml
photon_mosaic_pipeline/__init__.py
photon_mosaic_pipeline/cli.py
photon_mosaic_pipeline/logging_config.py
photon_mosaic_pipeline/paths_selection.py
photon_mosaic_pipeline/snakemake_utils.py
photon_mosaic_pipeline.egg-info/PKG-INFO
photon_mosaic_pipeline.egg-info/SOURCES.txt
photon_mosaic_pipeline.egg-info/dependency_links.txt
photon_mosaic_pipeline.egg-info/entry_points.txt
photon_mosaic_pipeline.egg-info/requires.txt
photon_mosaic_pipeline.egg-info/scm_file_list.json
photon_mosaic_pipeline.egg-info/scm_version.json
photon_mosaic_pipeline.egg-info/top_level.txt
photon_mosaic_pipeline/preprocessing/__init__.py
photon_mosaic_pipeline/preprocessing/contrast.py
photon_mosaic_pipeline/preprocessing/derotation.py
photon_mosaic_pipeline/preprocessing/noop.py
photon_mosaic_pipeline/preprocessing/stiminterpolation.py
photon_mosaic_pipeline/rules/__init__.py
photon_mosaic_pipeline/rules/preprocessing.py
photon_mosaic_pipeline/rules/suite2p_run.py
photon_mosaic_pipeline/workflow/Snakefile
photon_mosaic_pipeline/workflow/config.yaml
photon_mosaic_pipeline/workflow/preprocessing.smk
photon_mosaic_pipeline/workflow/suite2p.smk