pysam>=0.19.0
numpy>=1.20.0
pandas>=1.3.0
scipy>=1.7.0
scikit-learn>=1.0.0
matplotlib>=3.5.0
seaborn>=0.11.0
pyBigWig>=0.3.18
biopython>=1.79
tqdm>=4.60.0
pydeseq2>=0.4.0
mappy>=2.24

[aligners]
gapmm2>=0.2

[dev]
pytest>=7.0.0
pytest-cov>=3.0.0
black>=22.0.0
flake8>=4.0.0
mypy>=0.950

[docs]
mkdocs>=1.5.0
mkdocs-material>=9.4.0
mkdocstrings[python]>=0.24.0
mkdocs-autorefs>=0.5.0
pymdown-extensions>=10.0

[junction-aligners]
ultra-bioinformatics>=0.1

[visualize]
matplotlib>=3.5.0
seaborn>=0.12.0
