LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
graphfla/__init__.py
graphfla/_logging.py
graphfla/_progress.py
graphfla/distances.py
graphfla/exceptions.py
graphfla/filters.py
graphfla/lon.py
graphfla/sampling.py
graphfla/utils.py
graphfla.egg-info/PKG-INFO
graphfla.egg-info/SOURCES.txt
graphfla.egg-info/dependency_links.txt
graphfla.egg-info/requires.txt
graphfla.egg-info/top_level.txt
graphfla/_data/__init__.py
graphfla/_data/_validation.py
graphfla/_data/attributes.py
graphfla/_data/handlers.py
graphfla/_data/pipeline.py
graphfla/_data/sequences.py
graphfla/_neighbors/__init__.py
graphfla/_neighbors/_arrays.py
graphfla/_neighbors/_classify.py
graphfla/_neighbors/_kernels.py
graphfla/_neighbors/edges.py
graphfla/_neighbors/generators.py
graphfla/algorithms/__init__.py
graphfla/algorithms/_search_cache.py
graphfla/algorithms/walk.py
graphfla/analysis/__init__.py
graphfla/analysis/_evolvability.py
graphfla/analysis/_roughness.py
graphfla/analysis/_utils.py
graphfla/analysis/correlation.py
graphfla/analysis/fitness.py
graphfla/analysis/navigability.py
graphfla/analysis/profile.py
graphfla/analysis/robustness.py
graphfla/analysis/ruggedness.py
graphfla/analysis/epistasis/__init__.py
graphfla/analysis/epistasis/_fitness_trends.py
graphfla/analysis/epistasis/_walsh.py
graphfla/analysis/epistasis/gamma.py
graphfla/analysis/epistasis/idiosyncrasy.py
graphfla/analysis/epistasis/motifs.py
graphfla/analysis/epistasis/walsh_hadamard.py
graphfla/landscape/__init__.py
graphfla/landscape/_basin.py
graphfla/landscape/_build.py
graphfla/landscape/_compute.py
graphfla/landscape/_io.py
graphfla/landscape/_optima.py
graphfla/landscape/_plateaus.py
graphfla/landscape/boolean.py
graphfla/landscape/dna.py
graphfla/landscape/landscape.py
graphfla/landscape/ordinal.py
graphfla/landscape/protein.py
graphfla/landscape/rna.py
graphfla/landscape/sequence.py
graphfla/plotting/__init__.py
graphfla/plotting/plotting.py
graphfla/problems/__init__.py
graphfla/problems/base_problem.py
graphfla/problems/biological.py
graphfla/problems/combinatorial.py
tests/test_all.py
tests/test_analysis_api.py
tests/test_analysis_oracles.py
tests/test_api_regressions.py
tests/test_benchmark_comparison.py
tests/test_benchmark_contracts.py
tests/test_build_contracts.py
tests/test_compact_sequences.py
tests/test_construction.py
tests/test_construction_oracles.py
tests/test_ee_mutations.py
tests/test_epistasis_orders.py
tests/test_fitness_trends.py
tests/test_gamma.py
tests/test_golden_landscapes.py
tests/test_idiosyncrasy.py
tests/test_literature_contract.py
tests/test_metrics.py
tests/test_neighborhood_oracles.py
tests/test_problems.py
tests/test_profile.py
tests/test_r_s_ratio.py
tests/test_resource_guard.py
tests/test_utilities_contracts.py
tests/test_validation_contract.py
tests/test_walsh_hadamard.py