{% extends "layouts/base.html" %} {% from "macros/links.html" import omim_links %} {% from "macros/gt_calls.html" import gt_call %} {% from "macros/compounds.html" import compounds_table %} {% from "macros/transcripts.html" import vep_transcripts %} {% from "macros/genes.html" import gene_table %} {% block nav_left %}
  • Variants
  • {% endblock %} {% block container %} {# Overview #}
    {# Genotype and frequency #}
    Frequencies
      {% for frequency in variant.frequencies %}
    • {% if frequency.value %} {{ frequency.value|round(4) }} {% else %} — {% endif %} {{ frequency.label }}
    • {% else %}
    • No frequencies.
    • {% endfor %}
    {{ gt_call(variant.individuals) }}
    Inheritance models
      {% for model in variant.genetic_models %}
    • {{ model }}
    • {% else %}
    • N/A
    • {% endfor %}
    {# External links #}
    External links
    Ensembl UCSC SolveBio {% if variant.ID %} SNPedia {% endif %} SPANR
    {% if variant.genes %}
    {{ gene_table(variant.genes) }}
    {% endif %} {% if variant.transcripts %}
    {{ vep_transcripts(variant.transcripts) }}
    {% endif %} {% if variant.compounds %}
    {{ compounds_table(compounds, case_id) }}
    {% endif %} {% endblock %} {% block js_bottom %} {{ super() }} {% endblock %}