tropea_clustering.plotΒΆ

Functions for plotting the results.

Functions

color_trj_from_xyz

Saves a colored .xyz file ('colored_trj.xyz') in the working directory.

plot_medoids_multi

Compute and plot the average signal sequence inside each state.

plot_medoids_uni

Compute and plot the average signal sequence inside each state.

plot_one_trj_multi

Plots the colored trajectory of an example particle.

plot_one_trj_uni

Plots the colored trajectory of one example particle.

plot_output_multi

Plot a cumulative figure showing trajectories and identified states.

plot_output_uni

Plots clustering output with Gaussians and threshols.

plot_pop_fractions

Plot, for every time resolution, the populations of the ENVs.

plot_sankey

Plots the Sankey diagram at the desired frames.

plot_state_populations

Plot the populations of states over time.

plot_time_res_analysis

Plots the results of clustering at different time resolutions.