.coveragerc
.gitignore
.pre-commit-config.yaml
AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE.txt
README.md
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/workflows/publish-pypi.yml
.github/workflows/run-tests.yml
assets/fig1.png
docs/Makefile
docs/authors.md
docs/changelog.md
docs/conf.py
docs/contributing.md
docs/index.md
docs/license.md
docs/readme.md
docs/requirements.txt
docs/_static/.gitignore
scripts/finetune.py
scripts/predict_genes.py
src/decima/__init__.py
src/decima/decima_model.py
src/decima/evaluate.py
src/decima/interpret.py
src/decima/lightning.py
src/decima/loss.py
src/decima/metrics.py
src/decima/preprocess.py
src/decima/read_hdf5.py
src/decima/variant.py
src/decima/visualize.py
src/decima/write_hdf5.py
src/decima.egg-info/PKG-INFO
src/decima.egg-info/SOURCES.txt
src/decima.egg-info/dependency_links.txt
src/decima.egg-info/not-zip-safe
src/decima.egg-info/requires.txt
src/decima.egg-info/top_level.txt
tests/conftest.py
tests/test_package.py
tutorials/tutorial.ipynb
tutorials/variants.tsv