Metadata-Version: 2.4
Name: phys2bids
Version: 2.11.0
Summary: Python library to convert physiological data files into BIDS format
Home-page: https://github.com/physiopy/phys2bids
Download-URL: https://github.com/physiopy/phys2bids
Author: phys2bids developers
Maintainer: Stefano Moia
Maintainer-email: physiopy.community@gmail.com
License: Apache-2.0
Platform: OS Independent
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Programming Language :: Python :: 3.15
Provides: phys2bids
Requires-Python: >=3.6.1
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License-File: LICENSE
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<img alt="Phys2BIDS" src="https://github.com/physiopy/phys2bids/blob/master/docs/_static/phys2bids_logo1280×640.png" height="150">

phys2bids
=========

[![Latest version](https://img.shields.io/github/v/release/physiopy/phys2bids?style=flat&logo=github&sort=semver)](https://github.com/physiopy/phys2bids/releases)
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<!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section -->
[![All Contributors](https://img.shields.io/badge/all_contributors-29-orange.svg?style=flat)](#contributors)
<!-- ALL-CONTRIBUTORS-BADGE:END -->

``phys2bids`` is a python3 library meant to format physiological files in BIDS.
At the moment, it supports:
- ``.acq``, ``.txt``, and ``.mat`` AcqKnowledge format (BIOPAC)
- ``.txt`` and ``.mat`` LabChart format (ADInstruments)
- ``.smr`` Spike2 format (CED)
- GE MRI file format (GE)

We want to offer as much support as possible! If you have a file format that you want to see added, open an issue about it!

> If you use ``phys2bids`` in your work, please support it by citing the zenodo DOI of the version you used. You can find the latest version [here](https://doi.org/10.5281/zenodo.3470091)

> We also support gathering all relevant citations via [DueCredit](http://duecredit.org).

[Read the latest documentation](https://phys2bids.readthedocs.io/en/latest/) for more information on phys2bids!

Shortcuts:
- [Requirements](https://phys2bids.readthedocs.io/en/latest/installation.html#requirements)
- [Installation](https://phys2bids.readthedocs.io/en/latest/installation.html#linux-and-mac-installation)
- [Usage](https://phys2bids.readthedocs.io/en/latest/cli.html)
- [How to use phys2bids](https://phys2bids.readthedocs.io/en/latest/howto.html)
- [Contributing to phys2bids](https://phys2bids.readthedocs.io/en/latest/contributing.html)
- [Developer installation](https://phys2bids.readthedocs.io/en/latest/contributing.html#linux-and-mac-developer-installation)
- [**Contributor guide**](https://phys2bids.readthedocs.io/en/latest/contributorfile.html)
- [**Code of Conduct**](https://phys2bids.readthedocs.io/en/latest/conduct.html)
- [Developer calls calendar](https://calendar.google.com/calendar/u/0?cid=amoycDQ1MTdhMWdpaHNuNzlnOW1ucHJkMjRAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ)

## Tested OSs
All versions until `2.6.2` were tested on Linux and Windows. However, starting from version `2.7` onwards we had to **drop Windows testing**. The reason for this is related to the cost of running such tests: for each Windows test, we can run up to 8 tests on Linux instead. Partial Windows testing might be reintroduced in future releases.

Hence, while **we cannot ensure that phys2bids will run on Windows or MacOS/iOS**, we don't see any reason it shouldn't. Besides, it will run on Linux Subsystems.

We apologise for any discomfort.


<!-- ## Hacktoberfest
Hacktoberfest participants, welcome!
We have some issues for you [here](https://github.com/physiopy/phys2bids/issues?q=is%3Aissue+is%3Aopen+label%3Ahacktoberfest)!
However, feel free to tackle any issue you'd like. Depending on the issue and extent of contribution, Hacktoberfest related PRs might not count toward being listed as contributors and authors (unless there is the specific interest). You can ask about it in the issue itself!
Feel free to ask help to the contributors through issues or contactign directly Stefano, happy coding and (hopefully) enjoy your tee (or tree)!-->

## Contributors ✨

**We're always looking for code contributors,** but any suggestion/bug report is welcome! Feel free to open issues!

This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome!

Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)):
<!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section -->
<!-- prettier-ignore-start -->
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<table>
  <tbody>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://github.com/danalclop"><img src="https://avatars0.githubusercontent.com/u/38854309?v=4?s=100" width="100px;" alt="Daniel Alcalá"/><br /><sub><b>Daniel Alcalá</b></sub></a><br /><a href="#design-danalclop" title="Design">🎨</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/AyyagariA"><img src="https://avatars1.githubusercontent.com/u/50453337?v=4?s=100" width="100px;" alt="Apoorva Ayyagari"/><br /><sub><b>Apoorva Ayyagari</b></sub></a><br /><a href="#content-AyyagariA" title="Content">🖋</a> <a href="#data-AyyagariA" title="Data">🔣</a> <a href="https://github.com/physiopy/phys2bids/commits?author=AyyagariA" title="Documentation">📖</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/62442katieb"><img src="https://avatars1.githubusercontent.com/u/14095475?v=4?s=100" width="100px;" alt="Katie Bottenhorn"/><br /><sub><b>Katie Bottenhorn</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=62442katieb" title="Code">💻</a> <a href="#mentoring-62442katieb" title="Mentoring">🧑‍🏫</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3A62442katieb" title="Reviewed Pull Requests">👀</a> <a href="#content-62442katieb" title="Content">🖋</a></td>
      <td align="center" valign="top" width="25%"><a href="http://brightlab.northwestern.edu"><img src="https://avatars2.githubusercontent.com/u/32640425?v=4?s=100" width="100px;" alt="Molly Bright"/><br /><sub><b>Molly Bright</b></sub></a><br /><a href="#content-BrightMG" title="Content">🖋</a> <a href="#data-BrightMG" title="Data">🔣</a> <a href="#ideas-BrightMG" title="Ideas, Planning, & Feedback">🤔</a></td>
    </tr>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://github.com/CesarCaballeroGaudes"><img src="https://avatars1.githubusercontent.com/u/7611340?v=4?s=100" width="100px;" alt="Cesar Caballero Gaudes"/><br /><sub><b>Cesar Caballero Gaudes</b></sub></a><br /><a href="#content-CesarCaballeroGaudes" title="Content">🖋</a> <a href="#data-CesarCaballeroGaudes" title="Data">🔣</a> <a href="#ideas-CesarCaballeroGaudes" title="Ideas, Planning, & Feedback">🤔</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/ineschh"><img src="https://avatars0.githubusercontent.com/u/72545702?v=4?s=100" width="100px;" alt="Inés Chavarría"/><br /><sub><b>Inés Chavarría</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=ineschh" title="Code">💻</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/nw-duncan"><img src="https://avatars.githubusercontent.com/u/23524584?v=4?s=100" width="100px;" alt="Niall Duncan"/><br /><sub><b>Niall Duncan</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=nw-duncan" title="Code">💻</a> <a href="https://github.com/physiopy/phys2bids/commits?author=nw-duncan" title="Documentation">📖</a> <a href="#data-nw-duncan" title="Data">🔣</a> <a href="https://github.com/physiopy/phys2bids/commits?author=nw-duncan" title="Tests">⚠️</a> <a href="#ideas-nw-duncan" title="Ideas, Planning, & Feedback">🤔</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/vinferrer"><img src="https://avatars2.githubusercontent.com/u/38909338?v=4?s=100" width="100px;" alt="Vicente Ferrer"/><br /><sub><b>Vicente Ferrer</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3Avinferrer" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2bids/commits?author=vinferrer" title="Code">💻</a> <a href="https://github.com/physiopy/phys2bids/commits?author=vinferrer" title="Documentation">📖</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3Avinferrer" title="Reviewed Pull Requests">👀</a> <a href="https://github.com/physiopy/phys2bids/commits?author=vinferrer" title="Tests">⚠️</a></td>
    </tr>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://bitforge95.github.io/"><img src="https://avatars.githubusercontent.com/u/198489666?v=4?s=100" width="100px;" alt="Guttula Charan Sai"/><br /><sub><b>Guttula Charan Sai</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=BitForge95" title="Documentation">📖</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/yarikoptic"><img src="https://avatars.githubusercontent.com/u/39889?v=4?s=100" width="100px;" alt="Yaroslav Halchenko"/><br /><sub><b>Yaroslav Halchenko</b></sub></a><br /><a href="#infra-yarikoptic" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
      <td align="center" valign="top" width="25%"><a href="http://soichi.us"><img src="https://avatars3.githubusercontent.com/u/923896?v=4?s=100" width="100px;" alt="Soichi Hayashi"/><br /><sub><b>Soichi Hayashi</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3Asoichih" title="Bug reports">🐛</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/viacovella"><img src="https://avatars1.githubusercontent.com/u/1639782?v=4?s=100" width="100px;" alt="Vittorio Iacovella"/><br /><sub><b>Vittorio Iacovella</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=viacovella" title="Code">💻</a></td>
    </tr>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://github.com/sangfrois"><img src="https://avatars0.githubusercontent.com/u/38385719?v=4?s=100" width="100px;" alt="François Lespinasse"/><br /><sub><b>François Lespinasse</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3Asangfrois" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2bids/commits?author=sangfrois" title="Code">💻</a> <a href="#content-sangfrois" title="Content">🖋</a> <a href="https://github.com/physiopy/phys2bids/commits?author=sangfrois" title="Tests">⚠️</a></td>
      <td align="center" valign="top" width="25%"><a href="http://rossmarkello.com"><img src="https://avatars0.githubusercontent.com/u/14265705?v=4?s=100" width="100px;" alt="Ross Markello"/><br /><sub><b>Ross Markello</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3Armarkello" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2bids/commits?author=rmarkello" title="Code">💻</a> <a href="#content-rmarkello" title="Content">🖋</a> <a href="#ideas-rmarkello" title="Ideas, Planning, & Feedback">🤔</a> <a href="#infra-rmarkello" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3Armarkello" title="Reviewed Pull Requests">👀</a> <a href="https://github.com/physiopy/phys2bids/commits?author=rmarkello" title="Tests">⚠️</a> <a href="#mentoring-rmarkello" title="Mentoring">🧑‍🏫</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/m-miedema"><img src="https://avatars.githubusercontent.com/u/39968233?v=4?s=100" width="100px;" alt="m-miedema"/><br /><sub><b>m-miedema</b></sub></a><br /><a href="#tutorial-m-miedema" title="Tutorials">✅</a> <a href="#eventOrganizing-m-miedema" title="Event Organizing">📋</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/smoia"><img src="https://avatars3.githubusercontent.com/u/35300580?v=4?s=100" width="100px;" alt="Stefano Moia"/><br /><sub><b>Stefano Moia</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=smoia" title="Code">💻</a> <a href="#content-smoia" title="Content">🖋</a> <a href="#data-smoia" title="Data">🔣</a> <a href="#ideas-smoia" title="Ideas, Planning, & Feedback">🤔</a> <a href="#infra-smoia" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#projectManagement-smoia" title="Project Management">📆</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3Asmoia" title="Reviewed Pull Requests">👀</a> <a href="https://github.com/physiopy/phys2bids/commits?author=smoia" title="Documentation">📖</a> <a href="#mentoring-smoia" title="Mentoring">🧑‍🏫</a> <a href="#talk-smoia" title="Talks">📢</a> <a href="#promotion-smoia" title="Promotion">📣</a> <a href="#maintenance-smoia" title="Maintenance">🚧</a> <a href="#tutorial-smoia" title="Tutorials">✅</a></td>
    </tr>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://github.com/robertoostenveld"><img src="https://avatars1.githubusercontent.com/u/899043?v=4?s=100" width="100px;" alt="Robert Oostenveld"/><br /><sub><b>Robert Oostenveld</b></sub></a><br /><a href="#ideas-robertoostenveld" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3Arobertoostenveld" title="Reviewed Pull Requests">👀</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/me-pic"><img src="https://avatars.githubusercontent.com/u/77584086?v=4?s=100" width="100px;" alt="Marie-Eve Picard"/><br /><sub><b>Marie-Eve Picard</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3Ame-pic" title="Reviewed Pull Requests">👀</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/bpinsard"><img src="https://avatars.githubusercontent.com/u/1155388?v=4?s=100" width="100px;" alt="Basile Pinsard"/><br /><sub><b>Basile Pinsard</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=bpinsard" title="Code">💻</a> <a href="https://github.com/physiopy/phys2bids/commits?author=bpinsard" title="Tests">⚠️</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/drombas"><img src="https://avatars.githubusercontent.com/u/50577357?v=4?s=100" width="100px;" alt="David Romero-Bascones"/><br /><sub><b>David Romero-Bascones</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3Adrombas" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2bids/commits?author=drombas" title="Code">💻</a> <a href="https://github.com/physiopy/phys2bids/commits?author=drombas" title="Documentation">📖</a> <a href="#content-drombas" title="Content">🖋</a></td>
    </tr>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://github.com/tsalo"><img src="https://avatars3.githubusercontent.com/u/8228902?v=4?s=100" width="100px;" alt="Taylor Salo"/><br /><sub><b>Taylor Salo</b></sub></a><br /><a href="#ideas-tsalo" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2bids/commits?author=tsalo" title="Code">💻</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3Atsalo" title="Reviewed Pull Requests">👀</a> <a href="#infra-tsalo" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/RayStick"><img src="https://avatars3.githubusercontent.com/u/50215726?v=4?s=100" width="100px;" alt="Rachael Stickland"/><br /><sub><b>Rachael Stickland</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3ARayStick" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2bids/commits?author=RayStick" title="Code">💻</a> <a href="#data-RayStick" title="Data">🔣</a> <a href="https://github.com/physiopy/phys2bids/commits?author=RayStick" title="Documentation">📖</a> <a href="#userTesting-RayStick" title="User Testing">📓</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3ARayStick" title="Reviewed Pull Requests">👀</a> <a href="#infra-RayStick" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/eurunuela"><img src="https://avatars0.githubusercontent.com/u/13706448?v=4?s=100" width="100px;" alt="Eneko Uruñuela"/><br /><sub><b>Eneko Uruñuela</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3Aeurunuela" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2bids/commits?author=eurunuela" title="Code">💻</a> <a href="#infra-eurunuela" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="https://github.com/physiopy/phys2bids/pulls?q=is%3Apr+reviewed-by%3Aeurunuela" title="Reviewed Pull Requests">👀</a> <a href="https://github.com/physiopy/phys2bids/commits?author=eurunuela" title="Tests">⚠️</a> <a href="#mentoring-eurunuela" title="Mentoring">🧑‍🏫</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/merelvdthiel"><img src="https://avatars1.githubusercontent.com/u/72999546?v=4?s=100" width="100px;" alt="Merel van der Thiel"/><br /><sub><b>Merel van der Thiel</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=merelvdthiel" title="Code">💻</a></td>
    </tr>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://wanghaoting.com/"><img src="https://avatars.githubusercontent.com/u/13743617?v=4?s=100" width="100px;" alt="Hao-Ting Wang"/><br /><sub><b>Hao-Ting Wang</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=htwangtw" title="Code">💻</a> <a href="https://github.com/physiopy/phys2bids/commits?author=htwangtw" title="Documentation">📖</a> <a href="#data-htwangtw" title="Data">🔣</a> <a href="https://github.com/physiopy/phys2bids/commits?author=htwangtw" title="Tests">⚠️</a> <a href="#ideas-htwangtw" title="Ideas, Planning, & Feedback">🤔</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/kristinazvolanek"><img src="https://avatars3.githubusercontent.com/u/54590158?v=4?s=100" width="100px;" alt="Kristina Zvolanek"/><br /><sub><b>Kristina Zvolanek</b></sub></a><br /><a href="#data-kristinazvolanek" title="Data">🔣</a> <a href="#content-kristinazvolanek" title="Content">🖋</a> <a href="https://github.com/physiopy/phys2bids/commits?author=kristinazvolanek" title="Documentation">📖</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/marcelzwiers"><img src="https://avatars.githubusercontent.com/u/15156015?v=4?s=100" width="100px;" alt="Marcel Zwiers"/><br /><sub><b>Marcel Zwiers</b></sub></a><br /><a href="#plugin-marcelzwiers" title="Plugin/utility libraries">🔌</a></td>
      <td align="center" valign="top" width="25%"><a href="https://github.com/victox5"><img src="https://avatars1.githubusercontent.com/u/56017659?v=4?s=100" width="100px;" alt="victox5"/><br /><sub><b>victox5</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/commits?author=victox5" title="Documentation">📖</a></td>
    </tr>
    <tr>
      <td align="center" valign="top" width="25%"><a href="https://github.com/slugtmeijer"><img src="https://avatars.githubusercontent.com/u/134110542?v=4?s=100" width="100px;" alt="Selma Lugtmeijer"/><br /><sub><b>Selma Lugtmeijer</b></sub></a><br /><a href="https://github.com/physiopy/phys2bids/issues?q=author%3Aslugtmeijer" title="Bug reports">🐛</a></td>
    </tr>
  </tbody>
</table>

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License
-------

Copyright 2019-2020, The Phys2BIDS community.

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
