biopython>=1.86
matplotlib>=3.10.8
networkx>=3.4.2
numpy>=2.2.6
pandas>=2.3.3
coloredlogs>=15.0.1
pydssp>=0.9.1
freesasa>=2.2.1
seaborn>=0.13.2

[dev]
mypy>=1.15.0
pre-commit>=4.1.0
pytest>=8.3.5
ruff>=0.11.0

[docs]
sphinx>=9.0.4
furo>=2025.12.19
sphinx-autodoc-typehints>=3.6.1
numpydoc>=1.10.0
