click~=8.0
numpy~=2.3
biotite>=1.3
pysam>=0.18
pyopal~=0.7
foldcomp
tqdm
onnxruntime~=1.26.0
obonet>=0.3
networkx>=2.6

[dev]
pre-commit

[gpu]

[gpu:platform_system != "Darwin" and platform_machine != "aarch64" and platform_machine != "arm64"]
onnxruntime-gpu[cuda,cudnn]~=1.26.0
