Source code for mriqc.workflows.core

#!/usr/bin/env python
# -*- coding: utf-8 -*-
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
#
# @Author: oesteban
# @Date:   2016-01-05 11:24:05
# @Email:  code@oscaresteban.es
# @Last modified by:   oesteban
# @Last Modified time: 2016-01-18 08:36:22
""" The core module combines the existing workflows """
from .anatomical import anat_qc_workflow
from .functional import fmri_qc_workflow


[docs]def qc_workflows(settings=None, subjects=None): """ The CRN quality control workflows """ if subjects is None: raise RuntimeError('No subjects were provided') if settings is None: settings = {} skip = settings.get('skip', []) anat_wf = None if 'anat' not in skip and subjects['anat']: anat_wf = anat_qc_workflow(settings=settings, sub_list=subjects['anat']) if 'work_dir' in settings.keys(): anat_wf.base_dir = settings['work_dir'] if settings.get('write_graph', False): anat_wf.write_graph() func_wf = None if 'func' not in skip and subjects['func']: func_wf = fmri_qc_workflow(settings=settings, sub_list=subjects['func']) if 'work_dir' in settings.keys(): func_wf.base_dir = settings['work_dir'] if settings.get('write_graph', False): func_wf.write_graph() return anat_wf, func_wf