#!/usr/bin/env python
# -*- coding: utf-8 -*-
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
#
# @Author: oesteban
# @Date: 2016-01-05 11:24:05
# @Email: code@oscaresteban.es
# @Last modified by: oesteban
# @Last Modified time: 2016-01-18 08:36:22
""" The core module combines the existing workflows """
from .anatomical import anat_qc_workflow
from .functional import fmri_qc_workflow
[docs]def qc_workflows(settings=None, subjects=None):
""" The CRN quality control workflows """
if subjects is None:
raise RuntimeError('No subjects were provided')
if settings is None:
settings = {}
skip = settings.get('skip', [])
anat_wf = None
if 'anat' not in skip and subjects['anat']:
anat_wf = anat_qc_workflow(settings=settings, sub_list=subjects['anat'])
if 'work_dir' in settings.keys():
anat_wf.base_dir = settings['work_dir']
if settings.get('write_graph', False):
anat_wf.write_graph()
func_wf = None
if 'func' not in skip and subjects['func']:
func_wf = fmri_qc_workflow(settings=settings, sub_list=subjects['func'])
if 'work_dir' in settings.keys():
func_wf.base_dir = settings['work_dir']
if settings.get('write_graph', False):
func_wf.write_graph()
return anat_wf, func_wf