LICENSE
README.md
pyproject.toml
aria_tools/__init__.py
aria_tools/__main__.py
aria_tools/actions.py
aria_tools/constants.py
aria_tools/deno_utils.py
aria_tools/register_tools.py
aria_tools/server_utils.py
aria_tools.egg-info/PKG-INFO
aria_tools.egg-info/SOURCES.txt
aria_tools.egg-info/dependency_links.txt
aria_tools.egg-info/requires.txt
aria_tools.egg-info/top_level.txt
aria_tools/html_templates/__init__.py
aria_tools/tools/__init__.py
aria_tools/tools/best_pubmed_query.py
aria_tools/tools/diagrammer.py
aria_tools/tools/html_pager.py
aria_tools/tools/isa_parser.py
aria_tools/tools/protocol_reviewer.py
aria_tools/tools/protocol_updater.py
aria_tools/tools/protocol_writer.py
aria_tools/tools/pubmed_hitter.py
aria_tools/tools/pubmed_querier.py
aria_tools/tools/study_suggester.py
aria_tools/utils/__init__.py
aria_tools/utils/agents.py
aria_tools/utils/config.py
aria_tools/utils/io.py
aria_tools/utils/models.py
tests/test_best_pubmed_query.py
tests/test_diagram.py
tests/test_htmler.py
tests/test_isa_parser.py
tests/test_pipeline_integration.py
tests/test_protocol_reviewer.py
tests/test_protocol_updater.py
tests/test_protocol_writer.py
tests/test_pubmed_hitter.py
tests/test_pubmed_querier.py
tests/test_study_suggester.py