Metadata-Version: 2.3
Name: mhcflow
Version: 0.2.2
Summary: MHC Class I and II workflow with fisher, realigner and typer.
Project-URL: Source, https://github.com/svm-zhang/mhcflow
Project-URL: Documentation, https://svm-zhang.github.io/mhcflow/
Project-URL: Issues, https://github.com/svm-zhang/mhcflow/issues
Author-email: simo <svm.zhang@gmail.com>
Maintainer-email: Simo Zhang <svm.zhang@gmail.com>
License: MIT
Keywords: bioinformatics, genomics, sequencing, HLA typing
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries
Requires-Python: >=3.10
Requires-Dist: mhctyper>=0.1.7
Requires-Dist: pyahocorasick>=2.1.0
Requires-Dist: pyfaidx>=0.8.1.3
Requires-Dist: tinyscibio>=0.4.3
Description-Content-Type: text/markdown

# mhcflow

[![PyPI version](https://img.shields.io/pypi/v/mhcflow)](https://pypi.org/project/mhcflow/)
![Python versions](https://img.shields.io/pypi/pyversions/mhcflow)
[![PyPI Downloads](https://img.shields.io/pypi/dm/mhcflow)](https://pypistats.org/packages/mhcflow)
![License](https://img.shields.io/pypi/l/mhcflow)

MHC class I and II typing workflow including fishing, realigning, and typing that
generates results ready for detection of HLA loss of heterozygosity (LOH) and
peptide binding prediction.

## Installation

Starting from `v0.2.0`, `mhcflow` can be installed from PyPI:

```bash
pip install mhcflow
```

If you prefer to use the shell script implementation, please check out the
`v0.1.0` branch of this repo. For details on how to use the `v0.1.0` version,
please refer to the [documentation](https://svm-zhang.github.io/mhcflow).

## Quick start

Please refer to [documentation](https://svm-zhang.github.io/mhcflow) for more details.
