LICENSE
README.md
pyproject.toml
HYPeTools/__init__.py
HYPeTools/cli.py
HYPeTools/utils.py
HYPeTools/HVD/__init__.py
HYPeTools/HVD/extract_HVDs.py
HYPeTools/HVD/utils.py
HYPeTools/alignment/__init__.py
HYPeTools/alignment/semiglobal.py
HYPeTools/data/germline/GPallida_HYP1_top_seqs_dna_17_03_2025.fasta
HYPeTools/data/hvd_markers/GPallida_HYP1_HVD_markers.fasta
HYPeTools/data/motifs/GPallida_HYP1_17_03_25.json
HYPeTools/data/motifs/GPallida_HYP1_motifs_17_03_synthetic_base.fasta
HYPeTools/parser/__init__.py
HYPeTools/parser/compacter_parse_output.py
HYPeTools/parser/filter_parse_output.py
HYPeTools/parser/replace_parser.py
HYPeTools/parser/report.py
HYPeTools/parser/utils.py
HYPeTools/synthetic/create_synthetic_hyp_reads.py
hype_tools.egg-info/PKG-INFO
hype_tools.egg-info/SOURCES.txt
hype_tools.egg-info/dependency_links.txt
hype_tools.egg-info/entry_points.txt
hype_tools.egg-info/requires.txt
hype_tools.egg-info/top_level.txt