LICENCE.txt
README.md
pyproject.toml
gwas_norm/__init__.py
gwas_norm/_version.py
gwas_norm/columns.py
gwas_norm/common.py
gwas_norm/constants.py
gwas_norm/controllers.py
gwas_norm/crossmap.py
gwas_norm/errors.py
gwas_norm/files.py
gwas_norm/genome_assemblies.py
gwas_norm/gwas_norm_run.py
gwas_norm/handlers.py
gwas_norm/normalise.py
gwas_norm/parsers.py
gwas_norm/stats.py
gwas_norm/tests.py
gwas_norm.egg-info/PKG-INFO
gwas_norm.egg-info/SOURCES.txt
gwas_norm.egg-info/dependency_links.txt
gwas_norm.egg-info/entry_points.txt
gwas_norm.egg-info/requires.txt
gwas_norm.egg-info/top_level.txt
gwas_norm/example_data/__init__.py
gwas_norm/example_data/examples.py
gwas_norm/example_data/example_datasets/config/genomic_data.ini
gwas_norm/example_data/example_datasets/convert/new_study.xml
gwas_norm/example_data/example_datasets/convert/new_study_file.xml
gwas_norm/example_data/example_datasets/convert/old_study.xml
gwas_norm/example_data/example_datasets/convert/old_study_file.xml
gwas_norm/example_data/example_datasets/crossmap/GRCh37_to_GRCh38.chain.gz
gwas_norm/example_data/example_datasets/crossmap/GRCh37_to_NCBI34.chain.gz
gwas_norm/example_data/example_datasets/crossmap/GRCh37_to_NCBI35.chain.gz
gwas_norm/example_data/example_datasets/crossmap/GRCh37_to_NCBI36.chain.gz
gwas_norm/example_data/example_datasets/crossmap/GRCh38_to_GRCh37.chain.gz
gwas_norm/example_data/example_datasets/crossmap/GRCh38_to_NCBI34.chain.gz
gwas_norm/example_data/example_datasets/crossmap/GRCh38_to_NCBI35.chain.gz
gwas_norm/example_data/example_datasets/crossmap/GRCh38_to_NCBI36.chain.gz
gwas_norm/example_data/example_datasets/crossmap/NCBI34_to_GRCh37.chain.gz
gwas_norm/example_data/example_datasets/crossmap/NCBI34_to_GRCh38.chain.gz
gwas_norm/example_data/example_datasets/crossmap/NCBI35_to_GRCh37.chain.gz
gwas_norm/example_data/example_datasets/crossmap/NCBI35_to_GRCh38.chain.gz
gwas_norm/example_data/example_datasets/crossmap/NCBI36_to_GRCh37.chain.gz
gwas_norm/example_data/example_datasets/crossmap/NCBI36_to_GRCh38.chain.gz
gwas_norm/example_data/example_datasets/crossmap/crossmap_test_data.bed
gwas_norm/example_data/example_datasets/mapping_files/test_mapper.vcf.gz
gwas_norm/example_data/example_datasets/mapping_files/test_mapper.vcf.gz.tbi
gwas_norm/example_data/example_datasets/norm_data/test_mapper_b37.vcf.gz
gwas_norm/example_data/example_datasets/norm_data/test_mapper_b37.vcf.gz.tbi
gwas_norm/example_data/example_datasets/norm_data/test_mapper_b38.vcf.gz
gwas_norm/example_data/example_datasets/norm_data/test_mapper_b38.vcf.gz.tbi
gwas_norm/example_data/example_datasets/norm_data/study1/study1_00000001.results.xlsx
gwas_norm/example_data/example_datasets/norm_data/study1/test_gwas1.f1.txt.bz2
gwas_norm/example_data/example_datasets/norm_data/study1/test_gwas1.f2.txt.bz2
gwas_norm/example_data/example_datasets/norm_data/study1/test_gwas1.f3.txt.bz2
gwas_norm/example_data/example_datasets/norm_data/study1/test_study1.xml
gwas_norm/example_data/example_datasets/norm_data/study1/results/gwas_data/b37/data_files/test1_00000001.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study1/results/gwas_data/b37/summary_files/study1_00000001_bad_data.b37.txt
gwas_norm/example_data/example_datasets/norm_data/study1/results/gwas_data/b37/summary_files/study1_00000001_top_hits.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study1/results/gwas_data/b38/data_files/test1_00000001.b38.gnorm
gwas_norm/example_data/example_datasets/norm_data/study1/results/gwas_data/b38/summary_files/study1_00000001_bad_data.b38.txt
gwas_norm/example_data/example_datasets/norm_data/study1/results/gwas_data/b38/summary_files/study1_00000001_top_hits.b38.gnorm
gwas_norm/example_data/example_datasets/norm_data/study2/test_study2.txt.gz
gwas_norm/example_data/example_datasets/norm_data/study2/test_study2.xml
gwas_norm/example_data/example_datasets/norm_data/study2/results/gwas_data/b37/data_files/test2_00000002.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study2/results/gwas_data/b37/summary_files/study2_00000002_top_hits.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study3/test_study3.txt.gz
gwas_norm/example_data/example_datasets/norm_data/study3/test_study3.xml
gwas_norm/example_data/example_datasets/norm_data/study3/results/gwas_data/b37/data_files/test3_00000003.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study3/results/gwas_data/b37/summary_files/study3_00000003_bad_data.b37.txt
gwas_norm/example_data/example_datasets/norm_data/study3/results/gwas_data/b37/summary_files/study3_00000003_top_hits.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study4/test_study4.txt
gwas_norm/example_data/example_datasets/norm_data/study4/test_study4.xml
gwas_norm/example_data/example_datasets/norm_data/study4/results/gwas_data/b37/data_files/test4_00000004.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study4/results/gwas_data/b37/summary_files/study4_00000004_top_hits.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study5/test_gwas5_ais_eur.txt
gwas_norm/example_data/example_datasets/norm_data/study5/test_gwas5_as_eur.txt
gwas_norm/example_data/example_datasets/norm_data/study5/test_gwas5_svs_eur.txt
gwas_norm/example_data/example_datasets/norm_data/study5/test_study5.xml
gwas_norm/example_data/example_datasets/norm_data/study5/results/gwas_data/b37/data_files/any_ischaemic_stroke_eur_00000003.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study5/results/gwas_data/b37/data_files/any_stroke_eur_00000003.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study5/results/gwas_data/b37/data_files/small_vessel_stroke_eur_00000003.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study5/results/gwas_data/b37/summary_files/study5_00000003_top_hits.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study6/test_gwas6.f1.txt.bz2
gwas_norm/example_data/example_datasets/norm_data/study6/test_gwas6.f2.txt.bz2
gwas_norm/example_data/example_datasets/norm_data/study6/test_gwas6.f3.txt.bz2
gwas_norm/example_data/example_datasets/norm_data/study6/test_study6.xml
gwas_norm/example_data/example_datasets/norm_data/study6/results/gwas_data/b37/data_files/test6_00000006.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/study6/results/gwas_data/b37/summary_files/study6_00000006_bad_data.b37.txt
gwas_norm/example_data/example_datasets/norm_data/study6/results/gwas_data/b37/summary_files/study6_00000006_top_hits.b37.gnorm
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas2.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas3.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas4.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas5.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas6.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas7.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas8.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas9_chr12.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas9_chr19.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas9_chr3.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas9_chr5.txt
gwas_norm/example_data/example_datasets/norm_data/temp/test_gwas9_chr6.txt
gwas_norm/example_data/example_datasets/top_hits/test_analysis_file_grch37.xml
gwas_norm/example_data/example_datasets/top_hits/test_study_file_grch37.xml
gwas_norm/example_data/example_datasets/top_hits/analysis_file_result/test_study1_12345678_top_hits.b38.gnorm
gwas_norm/example_data/example_datasets/top_hits/analysis_file_result/test_study1_12345678_top_hits.grch37.gnorm
gwas_norm/example_data/example_datasets/top_hits/b38/data_files/analysis1_12345678.b38.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/b38/data_files/analysis2_12345678.b38.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/b38/data_files/analysis3_12345678.b38.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/b38/data_files/analysis4_12345678.b38.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/b38/data_files/test_study1_12345678.b38.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/grch37/data_files/analysis1_12345678.grch37.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/grch37/data_files/analysis2_12345678.grch37.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/grch37/data_files/analysis3_12345678.grch37.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/grch37/data_files/analysis4_12345678.grch37.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/grch37/data_files/test_study1_12345678.grch37.gnorm.gz
gwas_norm/example_data/example_datasets/top_hits/study_file_result/test_study1_12345678_top_hits.b38.gnorm
gwas_norm/example_data/example_datasets/top_hits/study_file_result/test_study1_12345678_top_hits.grch37.gnorm
gwas_norm/example_data/example_datasets/vcf_input_map/test_contigs.vcf.gz
gwas_norm/example_data/example_datasets/vcf_input_map/test_contigs.vcf.gz.tbi
gwas_norm/example_data/example_datasets/vcf_input_map/test_mapper.vcf.gz
gwas_norm/example_data/example_datasets/vcf_input_map/test_mapper.vcf.gz.tbi
gwas_norm/example_data/example_datasets/vcf_input_map/test_no_contigs.vcf.gz
gwas_norm/example_data/example_datasets/vcf_input_map/test_no_contigs_tabix.vcf.gz
gwas_norm/example_data/example_datasets/vcf_input_map/test_no_contigs_tabix.vcf.gz.tbi
gwas_norm/hpc/__init__.py
gwas_norm/hpc/hpc_gwas_norm.py
gwas_norm/metadata/__init__.py
gwas_norm/metadata/analysis.py
gwas_norm/metadata/base.py
gwas_norm/metadata/cohort.py
gwas_norm/metadata/column.py
gwas_norm/metadata/convert.py
gwas_norm/metadata/file.py
gwas_norm/metadata/gwas_data.py
gwas_norm/metadata/info.py
gwas_norm/metadata/phenotype.py
gwas_norm/metadata/study.py
gwas_norm/metadata/test.py