Installation instructions¶
BioSimulators-pyNeuroML is available as three command-line programs and three command-line programs encapsulated into three Docker images.
Command-line program¶
After installing Python (>= 3.7), pip, and Java run the following command to install BioSimulators-pyNeuroML:
pip install biosimulators-pyneuroml
Add the netpyne
option to install support for NetPyNe.
pip install biosimulators-pyneuroml[netpyne]
Add the neuron
option to install support for NEURON.
pip install biosimulators-pyneuroml[neuron]
Docker images with command-line entrypoints¶
After installing Docker, run the following commands to install the Docker images for jNeuroML/pyNeuroML, NetPyNe, and NEURON:
docker pull ghcr.io/biosimulators/netpyne
docker pull ghcr.io/biosimulators/neuron
docker pull ghcr.io/biosimulators/pyneuroml