numpy
pandas
scipy
matplotlib
tqdm
joblib
scikit-learn>=1.7.2
pymc>=5.25.1
arviz>=0.22.0
networkx>=3.4.2
torch>=2.9.1
mygene>=3.2.2
requests>=2.32.5
fair-esm>=2.0.0
seaborn>=0.13.2
snakemake>=7.32.4
pytest>=9.0.2
ruff>=0.15.7
mypy>=1.19.1
mkdocs>=1.6.1
mkdocs-material>=9.7.6
mkdocstrings[python]>=1.0.3
transformers>=5.3.0
shap>=0.49.1

[dev]
pytest
pytest-cov
black
ruff
mypy

[docs]
mkdocs
mkdocs-shadcn
mkdocstrings[python]
pymdown-extensions>=10.12
