multi_med_image_mlΒΆ
- multi_med_image_ml package
- Submodules
- multi_med_image_ml.DataBaseWrapper module
DataBaseWrapperDataBaseWrapper.databaseDataBaseWrapper.filenameDataBaseWrapper.labelsDataBaseWrapper.confoundsDataBaseWrapper.val_rangesDataBaseWrapper.X_dimDataBaseWrapper.key_to_filenameDataBaseWrapper.jdictDataBaseWrapper.columnsDataBaseWrapper.add_json()DataBaseWrapper.build_metadata()DataBaseWrapper.get_ID()DataBaseWrapper.get_birth_date()DataBaseWrapper.get_confound_encode()DataBaseWrapper.get_exam_date()DataBaseWrapper.get_file_list()DataBaseWrapper.get_label_encode()DataBaseWrapper.has_im()DataBaseWrapper.in_val_ranges()DataBaseWrapper.loc_val()DataBaseWrapper.out_dataframe()DataBaseWrapper.parse_date()DataBaseWrapper.stack_list_by_label()
- multi_med_image_ml.MedImageLoader module
MedImageLoaderMedImageLoader.databaseMedImageLoader.X_dimMedImageLoader.Y_dimMedImageLoader.C_dimMedImageLoader.batch_sizeMedImageLoader.augmentMedImageLoader.dtypeMedImageLoader.labelMedImageLoader.confoundsMedImageLoader.pandas_cacheMedImageLoader.cacheMedImageLoader.key_to_filenameMedImageLoader.batch_by_pidMedImageLoader.file_record_nameMedImageLoader.channels_firstMedImageLoader.static_inputsMedImageLoader.val_rangesMedImageLoader.match_confoundsMedImageLoader.all_recordsMedImageLoader.n_dyn_inputsMedImageLoader.precedenceMedImageLoader.build_pandas_database()MedImageLoader.get_abs_index()MedImageLoader.get_file_list()MedImageLoader.get_index()MedImageLoader.index_plus()MedImageLoader.index_zero()MedImageLoader.load_image_stack()MedImageLoader.name()MedImageLoader.read_record()MedImageLoader.record()MedImageLoader.rotate_labels()MedImageLoader.switch_stack()MedImageLoader.tl()
key_to_filename_default()
- multi_med_image_ml.MultiInputTester module
MultiInputTesterMultiInputTester.databaseMultiInputTester.modelMultiInputTester.out_record_folderMultiInputTester.checkpoint_dirMultiInputTester.nameMultiInputTester.test_nameMultiInputTester.database_keyMultiInputTester.min_pidsMultiInputTester.top_not_meanMultiInputTester.include_indsMultiInputTester.same_patientsMultiInputTester.x_axis_optsMultiInputTester.acc()MultiInputTester.attn_map_vis()MultiInputTester.grad_cam()MultiInputTester.loop()MultiInputTester.out_grad_cam_groups()MultiInputTester.out_state_dict()MultiInputTester.pca_analysis()MultiInputTester.plot()MultiInputTester.read_json()MultiInputTester.record()MultiInputTester.save_encodings()
NotEnoughPatients
- multi_med_image_ml.MultiInputTrainer module
LossTrackerLossTracker.add_target()LossTracker.get_last_xs()LossTracker.get_last_y_class_adv_loss()LossTracker.get_last_y_class_loss()LossTracker.get_last_y_kl_loss()LossTracker.get_last_y_reg_loss()LossTracker.load()LossTracker.plot()LossTracker.save()LossTracker.smooth()LossTracker.title()LossTracker.update()
MultiInputTrainerMultiInputTrainer.modelMultiInputTrainer.lrMultiInputTrainer.loss_functionMultiInputTrainer.nameMultiInputTrainer.optimizerMultiInputTrainer.optimizer_regMultiInputTrainer.out_record_folderMultiInputTrainer.checkpoint_dirMultiInputTrainer.save_latest_freqMultiInputTrainer.batch_sizeMultiInputTrainer.verboseMultiInputTrainer.update_classifierMultiInputTrainer.indexMultiInputTrainer.get_time_str()MultiInputTrainer.log_time()MultiInputTrainer.loop()MultiInputTrainer.reset_time()MultiInputTrainer.test()
- multi_med_image_ml.Records module
AllRecordsBatchRecordBatchRecord.image_recordsBatchRecord.dtypeBatchRecord.gpu_idsBatchRecord.channels_firstBatchRecord.batch_sizeBatchRecord.get_C()BatchRecord.get_C_dud()BatchRecord.get_X()BatchRecord.get_X_files()BatchRecord.get_Y()BatchRecord.get_birth_dates()BatchRecord.get_exam_dates()BatchRecord.get_static_inputs()BatchRecord.get_text_records()BatchRecord.name()BatchRecord.shift_order()BatchRecord.sort_order()
FileLookupImageRecordImageRecord.filenameImageRecord.databaseImageRecord.dtypeImageRecord.extra_info_listImageRecord.X_dimImageRecord.Y_dimImageRecord.C_dimImageRecord.imageImageRecord.YImageRecord.CImageRecord.y_on_cImageRecord.times_calledImageRecord.static_inputsImageRecord.static_input_resImageRecord.cacheImageRecord.npy_fileImageRecord.npy_fileImageRecord.exam_dateImageRecord.bdateImageRecord.json_fileImageRecord.loadedImageRecord.clear_image()ImageRecord.get_C()ImageRecord.get_C_dud()ImageRecord.get_X()ImageRecord.get_X_files()ImageRecord.get_Y()ImageRecord.get_image_type()ImageRecord.get_mem()ImageRecord.read_image()
PatientRecordRecordTextRecord()
- multi_med_image_ml.models module
- multi_med_image_ml.utils module
YC_conv()bucketize()check_key_to_filename()class_balance()combine_covar()compile_dicom()compile_dicom_folder()compile_dicom_py()date_sorter()determine_random_partition()determine_random_partition2()diagnose_network()discretize_value()download_file_from_google_drive()download_weights()encode_static_inputs()equal_terms()get_balanced_filename_list()get_class_selection()get_confirm_token()get_data_from_filenames()get_dim_str()get_file_list()get_file_list_from_list()get_file_list_from_str()get_first_n_primes()get_lr()get_multilabel_acc()get_none_array()get_prime_form()hidden_batch_predictions()integrate_arrs()integrate_arrs_none()is_dicom()is_float()is_image_file()is_list_str()is_nan()key_to_filename_default()label_to_community()list_to_str()mod_meas()multi_mannwhitneyu()nifti_to_np()not_temp()output_test()parsedate()prime()print_numpy()recompute_selection_ratios()resize_np()save_image()save_response_content()separate_set()str_to_list()tensor2im()test_all()text_to_bin()validate_database()
- Module contents