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.env.example
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CODE_OF_CONDUCT.md
CONTRIBUTING.md
Dockerfile
LICENSE
README.md
SECURITY.md
TOOLS.md
cliff.toml
mcp.codex.json
mcp.json
pyproject.toml
server.json
uv.lock
vault.yaml
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hooks/hooks.json
hooks/prompt.py
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packaging/silica-harness/README.md
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silica/.env.example
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silica/_version.py
silica/cli.py
silica/config.py
silica/core.py
silica/embeddings.py
silica/entry.py
silica/repl.py
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silica/driver/__init__.py
silica/driver/base.py
silica/driver/fs_backend.py
silica/driver/ws_backend.py
silica/kernel/__init__.py
silica/kernel/vault_manifest.py
silica/kernel/code/__init__.py
silica/kernel/code/codegraph.py
silica/kernel/code/codepack.py
silica/kernel/code/codeunits.py
silica/kernel/code/gitstate.py
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silica/kernel/code/codeast/__init__.py
silica/kernel/code/codeast/base.py
silica/kernel/code/codeast/c.py
silica/kernel/code/codeast/java.py
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silica/kernel/link/__init__.py
silica/kernel/link/ast.py
silica/kernel/recall/__init__.py
silica/kernel/recall/lexical.py
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silica/kernel/text/__init__.py
silica/kernel/text/language.py
silica/kernel/text/media.py
silica/kernel/text/payload.py
silica/kernel/text/sanitize.py
silica/kernel/text/text.py
silica/kernel/write/__init__.py
silica/kernel/write/frontmatter.py
silica/kernel/write/ops.py
silica/onboarding/__init__.py
silica/onboarding/adopt.py
silica/onboarding/checks.py
silica/onboarding/guidance.py
silica/onboarding/setup_client.py
silica/skills/silica/SKILL.md
silica/sources/__init__.py
silica/sources/convert.py
silica/tools/__init__.py
silica/tools/atomic.py
silica/ui/__init__.py
silica/ui/connect.py
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tests/test_ast_balance.py
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tests/test_config_ws.py
tests/test_contract_nudges.py
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tests/test_convert_child_reaping.py
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tests/test_mineru_error.py
tests/test_no_shadowed_imports.py
tests/test_plugin_manifests.py
tests/test_recall_windows.py
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tests/test_retrieval_check.py
tests/test_setup_client.py
tests/test_silicaignore.py
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tests/test_text_seam.py
tests/test_tokenizer_atoms.py
tests/test_tokenizer_folding.py
tests/test_tool_collapse_field.py
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