scanpy==1.11.5
anndata==0.11.4
pandas==2.3.3
numpy==2.2.6
scipy==1.15.3
scikit-learn==1.7.2
matplotlib==3.10.7
seaborn==0.13.2
scikit-optimize==0.10.2
optuna==4.8.0
celltypist==1.7.1
harmonypy==0.0.10
leidenalg==0.11.0
python-igraph==1.0.0
igraph==1.0.0
umap-learn==0.5.9.post2
scikit-misc==0.5.1
openpyxl==3.1.5
scrublet==0.2.3
scanorama==1.7.4
bbknn==1.6.0
statsmodels==0.14.6
tqdm==4.67.1
joblib==1.5.2
numba==0.62.1
h5py==3.15.1
pynndescent==0.5.13

[dev]
pytest
black
ruff
