# Sphinx and theme
sphinx>=4.0.0
furo
sphinx-rtd-theme

# Markdown and notebook support
myst-parser>=0.18.0
myst-nb>=0.17.0

# Extensions
sphinx-autodoc-typehints
sphinx-copybutton

# Math support
sphinx-math-dollar

# For rendering notebooks
ipykernel
nbformat
nbconvert

# Your package dependencies (needed for autodoc)
torch>=1.10.0
numpy>=1.20.0
pandas>=1.3.0
scanpy>=1.9.0
scikit-learn>=1.0.0
matplotlib>=3.5.0
seaborn>=0.11.0
tqdm>=4.62.0
anndata>=0.8.0
