.gitignore
.readthedocs.yaml
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
TCR_foundation_model/foundation_model_best.pt
TCR_foundation_model/pretrain_loss.csv
docs/Makefile
docs/requirements.txt
docs/figures/overview.png
docs/figures/overview1.png
docs/figures/overview2.png
docs/source/conf.py
docs/source/index.rst
docs/source/installation.rst
docs/source/_static/overview.png
docs/source/_static/overview1.png
docs/source/_static/overview2.png
docs/source/tutorials/01_pretrain.ipynb
docs/source/tutorials/02_classification.ipynb
docs/source/tutorials/03_specificity.ipynb
docs/source/tutorials/04_avidity.ipynb
docs/source/tutorials/05_cross_modal.ipynb
tcrfoundation/__init__.py
tcrfoundation/__version__.py
tcrfoundation/pretrain.py
tcrfoundation.egg-info/PKG-INFO
tcrfoundation.egg-info/SOURCES.txt
tcrfoundation.egg-info/dependency_links.txt
tcrfoundation.egg-info/requires.txt
tcrfoundation.egg-info/top_level.txt
tcrfoundation/.ipynb_checkpoints/pretrain-checkpoint.py
tcrfoundation/.ipynb_checkpoints/version-checkpoint.py
tcrfoundation/finetune/__init__.py
tcrfoundation/finetune/avidity.py
tcrfoundation/finetune/classification.py
tcrfoundation/finetune/cross_modal.py
tcrfoundation/finetune/specificity.py
tcrfoundation/finetune/utils.py
tcrfoundation/finetune/.ipynb_checkpoints/__init__-checkpoint.py
tcrfoundation/finetune/.ipynb_checkpoints/avidity-checkpoint.py
tcrfoundation/finetune/.ipynb_checkpoints/classification-checkpoint.py
tcrfoundation/finetune/.ipynb_checkpoints/cross_modal-checkpoint.py
tcrfoundation/finetune/.ipynb_checkpoints/specificity-checkpoint.py
tcrfoundation/finetune/.ipynb_checkpoints/utils-checkpoint.py
tutorials/01_pretrain.ipynb
tutorials/02_classification.ipynb
tutorials/03_specificity.ipynb
tutorials/04_avidity.ipynb
tutorials/05_cross_modal.ipynb