# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
.pybuilder/
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
Pipfile.lock

# poetry
poetry.lock

# pdm
.pdm.toml
.pdm-python
.pdm-build/

# PEP 582
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Cython debug symbols
cython_debug/

# Ruff
.ruff_cache/

# IDE
.idea/
.vscode/
*.swp
*.swo

# macOS
.DS_Store

# Claude worktrees
.claude/worktrees/
.claude/scheduled_tasks.lock

# eval-jss runtime state — corpus, manifest, skip-list, and precision history
# are all checked in; only the live SQLite database and per-paper SHA256
# marker files (`.sha256` left by `corpus fetch`) are ephemeral.
eval/eval.db
eval/eval.db-*
# SQLite WAL/SHM sidecars for the precision-history DB. Only the .db
# itself is checked in; spec-010's read-only precision query opens the
# DB through `file:...?mode=ro&uri=true` to avoid creating these, but
# any non-readonly invocation may produce them locally.
eval/precision-history.db-shm
eval/precision-history.db-wal
eval/*.bak
examples/**/.sha256
# CRAN-sourced vignettes — reproducible from eval/corpus-manifest.csv via
# `eval-jss corpus fetch`; SHA256-pinned, so we do not check in the payload.
examples/cran_*/
# GitHub-sourced manuscripts (non-CRAN JSS papers) — same deal: pinned to a
# commit + extracted-file SHA256 in the manifest and fetched on demand.
examples/github_*/
# Recall corpus — annotations.toml is committed (the novel work); the
# manuscripts and bibs are CRAN-vendored and reproduced via
# `python -m eval.recall_corpus_scaffold` (mirrors the precision-corpus
# pattern). Each vignette carries its source package's license, which is
# typically GPL-2/3 — incompatible with bundling into this MIT repo.
# `**/` matches arbitrary depth so papers split via \input subdirs
# (e.g. pmclust/pmclust-include/) are also covered.
eval/recall-corpus/**/*.Rnw
eval/recall-corpus/**/*.Rmd
eval/recall-corpus/**/*.tex
eval/recall-corpus/**/*.ltx
eval/recall-corpus/**/*.bib
eval/recall-corpus/**/*.cls
eval/recall-corpus/**/*.sty
eval/recall-corpus/**/*.pdf
eval/recall-corpus/**/.DS_Store
.claude/settings.local.json

# `entire` CLI injects hooks (commit-msg, post-commit, pre-push,
# prepare-commit-msg) into whichever directory core.hooksPath points at.
# Only our tracked pre-commit hook belongs under .githooks/; everything
# else is local state.
.githooks/*
!.githooks/pre-commit
eval/orphans/
/eval/.iteration-running

examples/jss5342-versions/

# vscode-extension (spec 012) — npm build artifacts.
# `package-lock.json` IS tracked (reproducible installs).
vscode-extension/node_modules/
vscode-extension/out/
vscode-extension/*.vsix

# r/jsslintr — testthat writes this on test failure.
r/jsslintr/tests/testthat/_problems/

# web/ (spec 018 browser WASM app) — `wasm-pack build --target web
# --out-dir web/pkg` output. Built by .github/workflows/publish-web.yml
# on every push to main; not committed.
web/pkg/
