# IDE / editors
.idea/
.vscode/
*.swp
*.swo
*~

# OS
.DS_Store
Thumbs.db

# Python
*.pyc
*.pyo
*.pyd
__pycache__/
*.egg-info/
*.egg
build/
dist/
*.whl
.eggs/

# Virtual environments
.venv/
venv/
env/

# Testing / coverage
.pytest_cache/
.coverage
htmlcov/
.tox/
.nox/

# Logs
*.log

# Jupyter
.ipynb_checkpoints/
dev.ipynb

# Project-specific
/private/
uv.lock

# Test data analysis outputs (generated by running the pipeline on test inputs)
test_data/_*
test_data/**/zbands.tif
test_data/**/mbands.tif
test_data/**/orientation.tif
test_data/**/cell_mask.tif
test_data/**/sarcomere_mask.tif
test_data/**/flow.tif
test_data/**/zbands_fast_movie.tif
test_data/**/data/
test_data/**/analysis/

# Benchmark run outputs (keep the README, ignore generated JSON results)
tests/benchmark_results/*.json